RNA id: TU28483


Basic Information

Item Value
RNA id TU28483
length 353
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G25253
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1769825 ~ 1770177 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCATTTTTGGGTGAACTAACCCTTTAACCTCGGAGATAATGGTTGGTCTGTCTTGAAAAATGCTACTGTTCAATTTCAAAATCAATTTCTCTATGGAGAAAGTGAATTGGATTGTAACTTCAGTAGTGCGACAGCTGTATAAACCAATTTGAAGCAGATGTCACAGGTACGTCACTTGCAGCATAGTGGTGGCAGAAAAACAGCAGTAACAAGTGGAGGAAAATGGGCAAAATCCACAGAATAAGAGAAAAATCTTTTGTTGTACCTTTGGATGTCAGAAGCGGAATGCAAAAAAATATTAATTTTACCGGCGCCCTTTGAAGCTAAACGCAGACTTTAAGTTGCAAGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28478 lncRNA upstream 7562 1760530 ~ 1762263 (+) True G25248
TU28479 lncRNA upstream 10603 1757912 ~ 1759222 (+) True G25249
TU28472 lncRNA upstream 65267 1704257 ~ 1704558 (+) True G25242
TU28422 lncRNA upstream 184205 1585266 ~ 1585620 (+) True G25192
TU28456 lncRNA upstream 198947 1570619 ~ 1570878 (+) True G25226
TU28484 lncRNA downstream 218 1770395 ~ 1770704 (+) True G25254
TU28572 lncRNA downstream 175749 1945926 ~ 1950133 (+) True G25337
TU28579 lncRNA downstream 185208 1955385 ~ 1955605 (+) True G25344
TU28580 lncRNA downstream 185965 1956142 ~ 1956492 (+) True G25345
TU28559 lncRNA downstream 186465 1956642 ~ 1957261 (+) True G25324
CI01000004_01757017_01757201.mRNA mRNA upstream 11961 1757017 ~ 1757864 (+) False CI01000004_01757017_01757201
CI01000004_01750322_01754593.mRNA mRNA upstream 14502 1750322 ~ 1755323 (+) True CI01000004_01750322_01754593
CI01000004_01715623_01744133.mRNA mRNA upstream 25692 1715623 ~ 1744133 (+) True CI01000004_01715623_01744133
CI01000004_01670419_01699238.mRNA mRNA upstream 70587 1670419 ~ 1699238 (+) True CI01000004_01670419_01699238
CI01000004_01623427_01625278.mRNA mRNA upstream 144485 1623427 ~ 1625340 (+) True CI01000004_01623427_01625278
CI01000004_01800502_01807872.mRNA mRNA downstream 30325 1800502 ~ 1808852 (+) True CI01000004_01800502_01807872
CI01000004_01823571_01825813.mRNA mRNA downstream 53394 1823571 ~ 1826766 (+) True CI01000004_01823571_01825813
CI01000004_01855598_01856473.mRNA mRNA downstream 85174 1855351 ~ 1856524 (+) True CI01000004_01855598_01856473
CI01000004_01867166_01868986.mRNA mRNA downstream 96989 1867166 ~ 1868986 (+) False CI01000004_01867166_01868986
CI01000004_01883020_01908403.mRNA mRNA downstream 112843 1883020 ~ 1908634 (+) True CI01000004_01883020_01908403
TU28416 other upstream 153355 1604542 ~ 1616470 (+) True G25187
TU28341 other upstream 421651 1347470 ~ 1348174 (+) True G25120
TU28378 other upstream 435836 1332465 ~ 1333989 (+) False CI01000004_01332533_01345585
TU27514 other upstream 1297979 467843 ~ 471846 (+) True CI01000004_00467911_00469949
TU28515 other downstream 93982 1864159 ~ 1873358 (+) True G25282
TU28564 other downstream 312880 2083057 ~ 2085707 (+) True G25329
TU29214 other downstream 777898 2548075 ~ 2573049 (+) True G25882
TU29329 other downstream 966359 2736536 ~ 2736768 (+) True G25992
TU29335 other downstream 988279 2758456 ~ 2758938 (+) True CI01000004_02745885_02768971

Expression Profile