RNA id: TU28593


Basic Information

Item Value
RNA id TU28593
length 277
lncRNA type sense_over
GC content 0.52
exon number 2
gene id G25358
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2085759 ~ 2122591 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAGGATGGCTTGAGGGTGTGTAAATCATGGGCTAATTTTTATTTTTGGGTGAACTATCCCTTTTTAATGCTTTTTATTCATCAAAGAATCCTTAAAAATCTTATCATGGTTTCCACAAATATATTAAGCAGCACAACTGTTTTCAACATTGATAATAATAATGATAATAATAAATGTTTCTTGAGCAGCAAATCATCATATTATAATGATTCCTGAAGGATCATGTGACACTAAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGCATCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28567 lncRNA upstream 4317 2074919 ~ 2081442 (+) True G25332
TU28547 lncRNA upstream 11678 2073722 ~ 2074081 (+) True CI01000004_02068075_02072887
TU28565 lncRNA upstream 12273 2073278 ~ 2073486 (+) False CI01000004_02068075_02072887
TU28532 lncRNA upstream 57967 1978730 ~ 2027792 (+) True G25297
TU28540 lncRNA upstream 124700 1958653 ~ 1959840 (+) True G25305
TU28560 lncRNA downstream 16327 2138918 ~ 2139139 (+) True G25325
TU28536 lncRNA downstream 16787 2139378 ~ 2140889 (+) True G25301
TU28609 lncRNA downstream 69598 2192189 ~ 2192405 (+) True G25372
TU28543 lncRNA downstream 71816 2194407 ~ 2195224 (+) True G25308
TU28545 lncRNA downstream 115435 2238026 ~ 2240157 (+) True G25310
CI01000004_02068075_02072887.mRNA mRNA upstream 11698 2067958 ~ 2074061 (+) False CI01000004_02068075_02072887
CI01000004_02033826_02057420.mRNA mRNA upstream 28106 2033003 ~ 2057653 (+) True CI01000004_02033826_02057420
CI01000004_02014703_02018248.mRNA mRNA upstream 67293 2014600 ~ 2018466 (+) True CI01000004_02014703_02018248
CI01000004_02004004_02012588.mRNA mRNA upstream 72345 2002871 ~ 2013414 (+) True CI01000004_02004004_02012588
CI01000004_01999847_02001406.mRNA mRNA upstream 82980 1999847 ~ 2002779 (+) True CI01000004_01999847_02001406
CI01000004_02126757_02136937.mRNA mRNA downstream 3875 2126466 ~ 2137348 (+) True CI01000004_02126757_02136937
CI01000004_02143355_02186281.mRNA mRNA downstream 20085 2142676 ~ 2186771 (+) True CI01000004_02143355_02186281
CI01000004_02528689_02568243.mRNA mRNA downstream 406098 2528689 ~ 2569227 (+) True CI01000004_02528689_02568243
CI01000004_02671199_02727898.mRNA mRNA downstream 548608 2671199 ~ 2728328 (+) True CI01000004_02671199_02727898
CI01000004_02745885_02768971.mRNA mRNA downstream 623294 2745885 ~ 2769135 (+) False CI01000004_02745885_02768971
TU28564 other upstream 52 2083057 ~ 2085707 (+) True G25329
TU28515 other upstream 212401 1864159 ~ 1873358 (+) True G25282
TU28416 other upstream 469289 1604542 ~ 1616470 (+) True G25187
TU28341 other upstream 737585 1347470 ~ 1348174 (+) True G25120
TU28378 other upstream 751770 1332465 ~ 1333989 (+) False CI01000004_01332533_01345585
TU29214 other downstream 425484 2548075 ~ 2573049 (+) True G25882
TU29329 other downstream 613945 2736536 ~ 2736768 (+) True G25992
TU29335 other downstream 635865 2758456 ~ 2758938 (+) True CI01000004_02745885_02768971
TU29632 other downstream 1386426 3509017 ~ 3522393 (+) True G26245
TU29692 other downstream 1428457 3551048 ~ 3552446 (+) True CI01000004_03550525_03552621

Expression Profile