RNA id: TU29617


Basic Information

Item Value
RNA id TU29617
length 2316
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G26233
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3586835 ~ 3589187 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCCTTCTAACTCCAAATGATCATCATTATAATGCTGATTGGTGGCATACTGCACAGTATAAATACACCATTCTACGACGGCAAAGAACCCTTTCAATTGTTTCAGACAGTCAGGATGATGCCATGATGACTCCTTCCTGTTGTGGGATCTTGATGAGTACCAGGTGTAGTGAACATAATGTAATGTAACATGATGAACTCTGATAGCTAGTGCAATGGTATGTTTCCAGTACTCTGCCTAAGTTGCTCTGAAAGCTCACAGCTCAAAAACTATAAAACGCTGGAACAAGTACTCCTTAAAATGGTCCGTACCACCAAAAAAGTACAAACAAAATCGATCTCTTTTGTAAATGTAAGTGACATTGCAAATCTTCAAATGTATAACAAAAAAAAAAGAAAAAAAAAAAAAAAGTAAAAAACCAAGTTAAAAATGATTCTTCTTAGTGTATTGGTCTGAAACCGCTGCCTTTTGAAAGCGGCAGAATTCAGGATGGCAGTGTACCATAATGTCAAGCGATTTTGAGATGCACCGATCTGGATTGTATCTGCAAAGATACAGACATTTTTTGTCAGATCAGATATCGATCTAAAATCAGACACTGTGCGCTTGCCAGGGATGTTACTGTTAGGACAAAAACTACTTAACGTAAGTTTTACTGCAATATACTGTATCGTAAGTCCTTTAAAGCCATTCTATATCTTTATGTAACAAACAGATATTTAAGTCGTTAAATTTAAGTTCATGAAAAGAGTCAGATGTCATTATCCATTAATCTGTATATAAAGGTCTTTGTTTTTGTTTAAAAGGACTGTACTTTACTGAAGTTTCTGAATGTTGTGGTTCTTGCTACTTGGTGTTTGTTAGATTAGAACATTTCTCGGGTCGGTAAAATTTTGTGGTTTGGAAAGAAGTATCTTATGCTCACCAAGACTGCATTGATTTGATCAAAAATACAGTAAAAACAGTAATATTGTGAAATATTATTTAAAAGAAACAGCATGTATTTAAAATGAATTAACAATGTAACAATGTAAAAGTCTTTGATCAATTTCATGCAGCCTTGTTGAATTTTTTTTTTTTTACTGACCCCAAACTTTTGAACAGTAGCATAGAATGTGTGTAAGTTTTTCTGTTTTCTATTTATTTATAATGAAGTTGTGTGTTTTTAGGGGCCGTTCACATGTTGCGTCTTTTGCGCGCTCAAGCTCATAATAGAAGCGTTTTTTCCAGGCGCGGCGAGATGAAATATATTCATAAATATTCTTTTCAGAATGCCGCAAGGTCATGTGACATGTCCAACCAATCAGCTTCGGCCTTTCAGTAACAACATCGAAAGCTCAGCCGAGATGGACGAACAGTTGCTCATAGCTGTACAAAGTACATAGCTGTACTTTGAAAAGATGAGAAAGTGGCACGGCCGGCGTTTTCCACACGTTTTTAGATGCGACATGTGAACGGCCCATTAGAAAGTTTGTGAAGTACTGGCCGATACGCACAATTCAGGTATTAAGGTATTAAATTGGGGAAAAAAAAAATGCTATCTGTGCATCCCTAATAGGTACTCAGTCTCCCACTTCAAGTAAACTGTAGTGAGTATTTATAACACAAGTCATTTTGGACATGTGGTATTTTAAATACAAAAAAAACAAAACAAAACAAAAGGCCTTCATCTGTTCACCAAAATAAATAACTTAGAGATTGAGCTCCTTTCCTCAACAAAAGAAGCTGTAACATAAGCTCACATTCAGGAGATAAAGAGCCTCCTGTGCTCAGAAGAAGGGTTGAATCAAAGACCTGCGTCTGCCCTTCCACACACTGGGGCAGGATACGCACTGAGTGCCCTGGACGGAGAATCACGTGTGAAGGCAGGGGCCTTAGCATTAAAATGCACTGTAAAAATCTTTGATATTTACACCGTTAATACATTCAGGCAGGAGAGGAGAGGCATCTCCTCCAATAGAGGTACATTTGGCACAATCAGTTAATGTTGCGACTCATTCCTCAACCGCATTGTGTCGGTCCCCTCAAAGTCTCTGATAGTTTCCAACAAGGATTGTCCCCGGAGACATTCAAGAACCCTTCAATGTCCCGCTCAGAGGAAGCCTGTCGGTAAGAAGGCACATGTGCATCTTAAGTGAGCCATCGCTCCCACCTCTGAAATCATGCTCTTCAGTGTTGTCTGGTCCAGAGTTTCCCAGGATCCTGCGTTTTCAAGTCCTCCAAGAAAGGCACCCACCTTGGGAGGTTCAAATCCCATTGGTTAAGTCTGTGATGATGTTGGCCTTCACCAACTTGCGGAGAAACTCCTTTTCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29664 lncRNA upstream 378 3585785 ~ 3586457 (+) True G26276
TU29705 lncRNA upstream 4070 3582544 ~ 3582765 (+) True G26317
TU29468 lncRNA upstream 155300 3408543 ~ 3408815 (+) True G26107
TU29581 lncRNA upstream 276804 3309796 ~ 3310031 (+) True G26199
TU29562 lncRNA upstream 298855 3287606 ~ 3287980 (+) True G26187
TU29737 lncRNA downstream 66626 3655813 ~ 3656027 (+) True G26349
TU29742 lncRNA downstream 77745 3666932 ~ 3667212 (+) True G26354
TU29747 lncRNA downstream 83845 3673032 ~ 3673247 (+) True G26359
TU29651 lncRNA downstream 87216 3676403 ~ 3676745 (+) True G26263
TU29630 lncRNA downstream 90534 3679721 ~ 3681358 (+) False G26244
CI01000004_03550525_03552621.mRNA mRNA upstream 33412 3550329 ~ 3553423 (+) False CI01000004_03550525_03552621
CI01000004_03504401_03504700.mRNA mRNA upstream 81903 3504278 ~ 3504932 (+) True CI01000004_03504401_03504700
CI01000004_03496175_03497985.mRNA mRNA upstream 88451 3494746 ~ 3498384 (+) True CI01000004_03496175_03497985
CI01000004_03432787_03433110.mRNA mRNA upstream 153381 3432787 ~ 3433454 (+) True CI01000004_03432787_03433110
CI01000004_03426800_03430289.mRNA mRNA upstream 156414 3425462 ~ 3430421 (+) False CI01000004_03426800_03430289
CI01000004_03592655_03592917.mRNA mRNA downstream 3468 3592655 ~ 3592917 (+) True CI01000004_03592655_03592917
CI01000004_03735876_03736152.mRNA mRNA downstream 146567 3735754 ~ 3737017 (+) True CI01000004_03735876_03736152
CI01000004_03814120_03839793.mRNA mRNA downstream 224864 3814051 ~ 3839807 (+) True CI01000004_03814120_03839793
CI01000004_03878083_03909016.mRNA mRNA downstream 288832 3878019 ~ 3909309 (+) True CI01000004_03878083_03909016
CI01000004_03934726_03935639.mRNA mRNA downstream 344498 3933685 ~ 3935870 (+) True CI01000004_03934726_03935639
TU29692 other upstream 34389 3551048 ~ 3552446 (+) True CI01000004_03550525_03552621
TU29632 other upstream 64442 3509017 ~ 3522393 (+) True G26245
TU29335 other upstream 827897 2758456 ~ 2758938 (+) True CI01000004_02745885_02768971
TU29329 other upstream 850067 2736536 ~ 2736768 (+) True G25992
TU29214 other upstream 1013786 2548075 ~ 2573049 (+) True G25882
TU31414 other downstream 1783638 5372825 ~ 5373803 (+) False G27805
TU31416 other downstream 1783638 5372825 ~ 5373803 (+) False G27805
TU31417 other downstream 1783638 5372825 ~ 5373803 (+) False G27805
TU31418 other downstream 1783638 5372825 ~ 5373803 (+) True G27805
TU31830 other downstream 2143402 5732589 ~ 5733001 (+) True G28165

Expression Profile