RNA id: TU29742


Basic Information

Item Value
RNA id TU29742
length 281
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G26354
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3666932 ~ 3667212 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGGAATGTTGTCCCATTCTTGTCTAATACAGGCTTCTAGATGCTCAACTGTCTTAGGTCTTCTTTGTCGCATCTTCCTCTTTATGATGCGCCAAATGTTTTCTATGGGTGAAAGATCTGGACTGCAGGCTGGCCATTTCAGTACCCGGATCCTTCTTCTACGCAGCCATGATGTTGTAACTGATGCAGTATGTGGTCTGGCATTGTCATGTTGGAAAATGCAAGGTCTTCCCTGAAAGAGACGACGTCTGGATGGGAGCATATGTTGTTCTAGAACTNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29737 lncRNA upstream 10905 3655813 ~ 3656027 (+) True G26349
TU29617 lncRNA upstream 77745 3586835 ~ 3589187 (+) True G26233
TU29664 lncRNA upstream 80475 3585785 ~ 3586457 (+) True G26276
TU29705 lncRNA upstream 84167 3582544 ~ 3582765 (+) True G26317
TU29468 lncRNA upstream 235397 3408543 ~ 3408815 (+) True G26107
TU29747 lncRNA downstream 5820 3673032 ~ 3673247 (+) True G26359
TU29651 lncRNA downstream 9191 3676403 ~ 3676745 (+) True G26263
TU29630 lncRNA downstream 12509 3679721 ~ 3681358 (+) False G26244
TU29631 lncRNA downstream 12509 3679721 ~ 3681358 (+) True G26244
TU29750 lncRNA downstream 34944 3702156 ~ 3702634 (+) True G26362
CI01000004_03592655_03592917.mRNA mRNA upstream 74015 3592655 ~ 3592917 (+) True CI01000004_03592655_03592917
CI01000004_03550525_03552621.mRNA mRNA upstream 113509 3550329 ~ 3553423 (+) False CI01000004_03550525_03552621
CI01000004_03504401_03504700.mRNA mRNA upstream 162000 3504278 ~ 3504932 (+) True CI01000004_03504401_03504700
CI01000004_03496175_03497985.mRNA mRNA upstream 168548 3494746 ~ 3498384 (+) True CI01000004_03496175_03497985
CI01000004_03432787_03433110.mRNA mRNA upstream 233478 3432787 ~ 3433454 (+) True CI01000004_03432787_03433110
CI01000004_03735876_03736152.mRNA mRNA downstream 68542 3735754 ~ 3737017 (+) True CI01000004_03735876_03736152
CI01000004_03814120_03839793.mRNA mRNA downstream 146839 3814051 ~ 3839807 (+) True CI01000004_03814120_03839793
CI01000004_03878083_03909016.mRNA mRNA downstream 210807 3878019 ~ 3909309 (+) True CI01000004_03878083_03909016
CI01000004_03934726_03935639.mRNA mRNA downstream 266473 3933685 ~ 3935870 (+) True CI01000004_03934726_03935639
CI01000004_04048829_04053849.mRNA mRNA downstream 378716 4045928 ~ 4054570 (+) True CI01000004_04048829_04053849
TU29692 other upstream 114486 3551048 ~ 3552446 (+) True CI01000004_03550525_03552621
TU29632 other upstream 144539 3509017 ~ 3522393 (+) True G26245
TU29335 other upstream 907994 2758456 ~ 2758938 (+) True CI01000004_02745885_02768971
TU29329 other upstream 930164 2736536 ~ 2736768 (+) True G25992
TU29214 other upstream 1093883 2548075 ~ 2573049 (+) True G25882
TU31414 other downstream 1705613 5372825 ~ 5373803 (+) False G27805
TU31416 other downstream 1705613 5372825 ~ 5373803 (+) False G27805
TU31417 other downstream 1705613 5372825 ~ 5373803 (+) False G27805
TU31418 other downstream 1705613 5372825 ~ 5373803 (+) True G27805
TU31830 other downstream 2065377 5732589 ~ 5733001 (+) True G28165

Expression Profile