RNA id: TU29750



Basic Information


Item Value
RNA id TU29750
length 479
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G26362
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3702156 ~ 3702634 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGCTATATCACTCTAGTCTATTTATGAACGCATTCTATCTTTTTATTCAGAACTAGACCTATATAAAATGATGGAAAAACAAATAAAATACAAAAAATATGAAACTGAAACTATCAGTATGATTAGTTTCAAATGTCATTCAGGAACAAAGCAAGTGTCAGTGAGTCGTTGAGTCATTTATTAGACCGATTAATTACAAAAATGCTAATTCAGTAATGAAACATTACTGTGCTGCTCGGAAATGCTCTGTGGATTTGTTTGGAACTATTTTCGTTGGCGAAATAAAGAAAACACAGTATTATCAAAAATGTAAGTCATCTAATATTAACTTTTTGTTTGTATCTTTTCGTACGAATTAGGTTTTACACATGGCAGCTGTTTTGCAAGAGATTCTTTGTAAAGCATAGACAGCTAAAGTGCAGAACTCCTTCACTTAAAGGGATAGTTCACCCAAAAATGAAAATTCTGTCATCATTTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU29630 lncRNA upstream 20798 3679721 ~ 3681358 (+) False G26244
TU29631 lncRNA upstream 20798 3679721 ~ 3681358 (+) True G26244
TU29651 lncRNA upstream 25411 3676403 ~ 3676745 (+) True G26263
TU29747 lncRNA upstream 28909 3673032 ~ 3673247 (+) True G26359
TU29742 lncRNA upstream 34944 3666932 ~ 3667212 (+) True G26354
TU29778 lncRNA downstream 98276 3800910 ~ 3802844 (+) True G26390
TU29806 lncRNA downstream 138198 3840832 ~ 3842544 (+) True G26416
TU29883 lncRNA downstream 239197 3941831 ~ 3942173 (+) True G26492
TU29884 lncRNA downstream 239659 3942293 ~ 3943340 (+) True G26493
TU29889 lncRNA downstream 246250 3948884 ~ 3949306 (+) True G26498
CI01000004_03592655_03592917.mRNA mRNA upstream 109239 3592655 ~ 3592917 (+) True CI01000004_03592655_03592917
CI01000004_03550525_03552621.mRNA mRNA upstream 148733 3550329 ~ 3553423 (+) False CI01000004_03550525_03552621
CI01000004_03504401_03504700.mRNA mRNA upstream 197224 3504278 ~ 3504932 (+) True CI01000004_03504401_03504700
CI01000004_03496175_03497985.mRNA mRNA upstream 203772 3494746 ~ 3498384 (+) True CI01000004_03496175_03497985
CI01000004_03432787_03433110.mRNA mRNA upstream 268702 3432787 ~ 3433454 (+) True CI01000004_03432787_03433110
CI01000004_03735876_03736152.mRNA mRNA downstream 33120 3735754 ~ 3737017 (+) True CI01000004_03735876_03736152
CI01000004_03814120_03839793.mRNA mRNA downstream 111417 3814051 ~ 3839807 (+) True CI01000004_03814120_03839793
CI01000004_03878083_03909016.mRNA mRNA downstream 175385 3878019 ~ 3909309 (+) True CI01000004_03878083_03909016
CI01000004_03934726_03935639.mRNA mRNA downstream 231051 3933685 ~ 3935870 (+) True CI01000004_03934726_03935639
CI01000004_04048829_04053849.mRNA mRNA downstream 343294 4045928 ~ 4054570 (+) True CI01000004_04048829_04053849
TU29692 other upstream 149710 3551048 ~ 3552446 (+) True CI01000004_03550525_03552621
TU29632 other upstream 179763 3509017 ~ 3522393 (+) True G26245
TU29335 other upstream 943218 2758456 ~ 2758938 (+) True CI01000004_02745885_02768971
TU29329 other upstream 965388 2736536 ~ 2736768 (+) True G25992
TU29214 other upstream 1129107 2548075 ~ 2573049 (+) True G25882
TU31414 other downstream 1670191 5372825 ~ 5373803 (+) False G27805
TU31416 other downstream 1670191 5372825 ~ 5373803 (+) False G27805
TU31417 other downstream 1670191 5372825 ~ 5373803 (+) False G27805
TU31418 other downstream 1670191 5372825 ~ 5373803 (+) True G27805
TU31830 other downstream 2029955 5732589 ~ 5733001 (+) True G28165

Expression Profile