RNA id: TU30926


Basic Information

Item Value
RNA id TU30926
length 373
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G27388
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5133205 ~ 5133577 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAGGTACACTATGTAACTTTTGGCCCTCTAGCGGTTAAAAAACAAAACTTCTTGTATTTTGAGGAAGAACATTGTTTTGGTTGTGCTTTGTCTCTGCATGACTGTGGATGAATATGGTTATCCTACTGCTCATAAAACATTCACTACTAGGCTTAAGAGATATAACCAGTTTTGATGGAAAGGATCTCAAGCTGACTAGCTGAAGACATTACTGTAGCTATACCCATCAATAGACACGGCACTTCCTCGAAAGTAAATTCCAGCACAGCGCCACAGCAACCCTTAATGAATTGTCCCTTCACAATAGATAATGCTTTACAATGATAATGCTTTACAAAAGATAATGCTTTACAATGTTAAAGAGCTATATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30921 lncRNA upstream 6707 5108262 ~ 5126498 (+) True G27383
TU30645 lncRNA upstream 16626 4991403 ~ 5116579 (+) False G27148
TU30646 lncRNA upstream 16626 4991403 ~ 5116579 (+) False G27148
TU30643 lncRNA upstream 16626 5039788 ~ 5116579 (+) False G27148
TU30647 lncRNA upstream 16626 5067702 ~ 5116579 (+) False G27148
TU31351 lncRNA downstream 73271 5206848 ~ 5208660 (+) True G27753
TU31357 lncRNA downstream 86038 5219615 ~ 5220010 (+) True G27757
TU31380 lncRNA downstream 115257 5248834 ~ 5249065 (+) True G27780
TU31382 lncRNA downstream 120092 5253669 ~ 5254045 (+) True G27782
TU31391 lncRNA downstream 131247 5264824 ~ 5265316 (+) True G27791
CI01000004_04924543_04956339.mRNA mRNA upstream 176770 4924508 ~ 4956435 (+) True CI01000004_04924543_04956339
CI01000004_04798717_04889650.mRNA mRNA upstream 243555 4798717 ~ 4889650 (+) True CI01000004_04798717_04889650
CI01000004_04786239_04788953.mRNA mRNA upstream 344244 4786239 ~ 4788961 (+) True CI01000004_04786239_04788953
CI01000004_04754556_04784656.mRNA mRNA upstream 348448 4754556 ~ 4784757 (+) True CI01000004_04754556_04784656
CI01000004_04690908_04706755.mRNA mRNA upstream 426305 4690908 ~ 4706900 (+) True CI01000004_04690908_04706755
CI01000004_05154049_05203177.mRNA mRNA downstream 20472 5154049 ~ 5203177 (+) True CI01000004_05154049_05203177
CI01000004_05227614_05231253.mRNA mRNA downstream 94037 5227614 ~ 5232052 (+) True CI01000004_05227614_05231253
CI01000004_05238552_05246750.mRNA mRNA downstream 103627 5237204 ~ 5247114 (+) True CI01000004_05238552_05246750
CI01000004_05343381_05353920.mRNA mRNA downstream 209804 5343381 ~ 5354231 (+) True CI01000004_05343381_05353920
CI01000004_05389431_05393230.mRNA mRNA downstream 255793 5389370 ~ 5394211 (+) True CI01000004_05389431_05393230
TU29692 other upstream 1580759 3551048 ~ 3552446 (+) True CI01000004_03550525_03552621
TU29632 other upstream 1610812 3509017 ~ 3522393 (+) True G26245
TU29335 other upstream 2374267 2758456 ~ 2758938 (+) True CI01000004_02745885_02768971
TU29329 other upstream 2396437 2736536 ~ 2736768 (+) True G25992
TU29214 other upstream 2560156 2548075 ~ 2573049 (+) True G25882
TU31414 other downstream 239248 5372825 ~ 5373803 (+) False G27805
TU31416 other downstream 239248 5372825 ~ 5373803 (+) False G27805
TU31417 other downstream 239248 5372825 ~ 5373803 (+) False G27805
TU31418 other downstream 239248 5372825 ~ 5373803 (+) True G27805
TU31830 other downstream 599012 5732589 ~ 5733001 (+) True G28165

Expression Profile