RNA id: TU31416



Basic Information


Item Value
RNA id TU31416
length 930
RNA type TUCP
GC content 0.40
exon number 2
gene id G27805
representative False

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5372825 ~ 5373803 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATACAAGATTGGGAAGTGGGGGAAGCGTAAAAGAACATATGGTTTGGTCTAAACATATACAAGGGCCTATGGCACAATTTAGCAATGTGTTGTTTGGTCAAATGAATTAAAGTCAAGAAGTAAAAAAAAAAAAAAAAAAAAAACTCTTAAAAAGCCACAATGCTTAAATTGGCCTGGAAACCATTTCATCTTTCTGGATGTCTTTTTTTGCACTGCTGTCAGTCTGAAAACTTGATGAAATCTGCATCCAATAAATGCTAGAAATGACAATGCTAAACCAAATGATGCTCAAAATGAGTTTAAATCTAGGGATACAGATTGTGGTTAATGTGTCATGAATGACATTTGACGAATACTTTCATTTCTCCTCTAACCCATCTCAACTTTTAAAAGGACCAAACTTTAAAACTATAGTCTATTGTCTACCTACCTAATAAAATACTGTTTAATCAATAGAGGAATGATGATATAAAAACACTCCTCTTAACATCTGTTTCTTGTCATATAAAAAAGGCCAGCGAGGGAAAAAAAACCTCGCTCTGTTGATGAAAGGATTCCAAAAATAATCATCTGTGCTGTACGCCTGCAGTTTAATAGTCAATCCCATGGTCATAGTGGGCTCTGTATTCATTGTGGTAGTCTGCCTGGTACTCATCCGGATATTCCCCTTGGTATTCAGCCTGGTAGTCGCTGTCGCTGATCTCGGAGCCATTGGTGCCGGTGCCCTGGCTGCCATTGCTGTGGATGGTGGGCTCAGTGGGGGAGGCGCAGTATTTGGGATCGTACACCTGCCTGCCCAGCCCGTACACGCTCATGCCCTTCTGAGAGGCCACCTTGTTGGTGCCCATTTGCAGCGAGATTGTGGAGTTGTCCAGAGGCTGGACAGCCACTTTCTGGTCGAAAATATCCCTCCTGGTGCCGGGGGCCGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU31457 lncRNA upstream 2880 5369697 ~ 5369945 (+) True G27836
TU31403 lncRNA upstream 14969 5355151 ~ 5357856 (+) False G27801
TU31404 lncRNA upstream 14969 5355151 ~ 5357856 (+) True G27801
TU31394 lncRNA upstream 96473 5276112 ~ 5276352 (+) True G27794
TU31391 lncRNA upstream 107509 5264824 ~ 5265316 (+) True G27791
TU31557 lncRNA downstream 67561 5441364 ~ 5441713 (+) True G27921
TU31591 lncRNA downstream 105337 5479140 ~ 5479363 (+) True G27943
TU31592 lncRNA downstream 105732 5479535 ~ 5479749 (+) True G27944
TU31570 lncRNA downstream 108002 5481805 ~ 5581710 (+) True G27924
TU31672 lncRNA downstream 265928 5639731 ~ 5639932 (+) True G28018
CI01000004_05343381_05353920.mRNA mRNA upstream 18594 5343381 ~ 5354231 (+) True CI01000004_05343381_05353920
CI01000004_05238552_05246750.mRNA mRNA upstream 125711 5237204 ~ 5247114 (+) True CI01000004_05238552_05246750
CI01000004_05227614_05231253.mRNA mRNA upstream 140773 5227614 ~ 5232052 (+) True CI01000004_05227614_05231253
CI01000004_05154049_05203177.mRNA mRNA upstream 169648 5154049 ~ 5203177 (+) True CI01000004_05154049_05203177
CI01000004_04924543_04956339.mRNA mRNA upstream 416390 4924508 ~ 4956435 (+) True CI01000004_04924543_04956339
CI01000004_05389431_05393230.mRNA mRNA downstream 15567 5389370 ~ 5394211 (+) True CI01000004_05389431_05393230
CI01000004_05397192_05402109.mRNA mRNA downstream 23292 5397095 ~ 5402109 (+) True CI01000004_05397192_05402109
CI01000004_05454350_05455993.mRNA mRNA downstream 80038 5453841 ~ 5455993 (+) True CI01000004_05454350_05455993
CI01000004_05459139_05467673.mRNA mRNA downstream 85336 5459139 ~ 5468857 (+) True CI01000004_05459139_05467673
CI01000004_05474127_05476501.mRNA mRNA downstream 99276 5473079 ~ 5476755 (+) True CI01000004_05474127_05476501
TU29692 other upstream 1820379 3551048 ~ 3552446 (+) True CI01000004_03550525_03552621
TU29632 other upstream 1850432 3509017 ~ 3522393 (+) True G26245
TU29335 other upstream 2613887 2758456 ~ 2758938 (+) True CI01000004_02745885_02768971
TU29329 other upstream 2636057 2736536 ~ 2736768 (+) True G25992
TU29214 other upstream 2799776 2548075 ~ 2573049 (+) True G25882
TU31830 other downstream 358786 5732589 ~ 5733001 (+) True G28165
TU32005 other downstream 1096225 6470028 ~ 6502087 (+) True G28302
TU32079 other downstream 1197417 6572819 ~ 6574421 (+) True G28354
TU32454 other downstream 2280969 7654772 ~ 7654879 (+) True G28706
TU32590 other downstream 3059902 8439958 ~ 8451227 (+) True G28818

Expression Profile