RNA id: CI01000006_11651067_11653761.mRNA


Basic Information

Item Value
RNA id CI01000006_11651067_11653761.mRNA
length 1204
RNA type mRNA
GC content 0.40
exon number 3
gene id CI01000006_11651067_11653761
representative False

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11650363 ~ 11654424 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGGTTTCAGGAAAAGGCGGGGCTTGTGCTTTCAGCTGCATTGTGGGAGCGGGAAAACGCCGCAAATACTCACGTTGTTCAATAGTGGAGATTTCAACGAAGCCGTCTACTCAAGGTACTCTAACGCTTAATGGCGAAAATCTACTACTTGTAGTTTGTTACTTGGTCTTTCACTAAAATACACAGTCGTGTTTGATCTATTTGATTCTTTAGCGGAGAAACGTCCATTTTAGACAGTCATTGTTTGCTTGGTTTATTCATGCGACTCGTTTGAGATCAGTCTAGATATTAATTGTGAATTTGTTAGTTTAGCTACTGAAGTCAGTATAAGCGAACTAGTAAATACCAAAACTGAATGATTTTCATGACGTTCGTTTTACACCGTAGATTGTGTCCTCCAATATGCACAGAACACGATTCCCGAACGAATGGTTCTTATGAGCCGGTTCTTTTTAGTGAATCACAACTATAAAGCGTGACCAGTGTTGTCCGATTGCCGAACGAATCGTTCCAATGAGTCGGCTCTTGTTCTAATGAGTCGGAACTGTGGCACATTCTCACTGTACTGCTGTCCACTAGTTATTACTTTCGTCATTTTTGATTCGAAAATAACCTAAATTTATTTGCTGATAATTAACTTGTTTTTCTCTCCTAGATTAAAACATGTCTATTGGTGTTCCCATCAAAGTCCTGCATGAAGCAGAGGGTCACATCGTGACCTGCGAGACAAACACGGGTGAAGTGTACAGAGGCAAACTGATTGAAGCCGAGGATAACATGAACTGCCAGATGTCCAACATTACAGTGACCTATCGAGATGGCAGAGTGTCCCAGCTGGAGCAGGTGTACATTCGCGGCAGCAAAATACGCTTTCTCATTCTACCTGATATGTTGAAAAACGCCCCTATGTTGAAGAGCATGAAAAACAAAAACCAAGGGGCAGGAGCTGGAAGAGGCAAAGCTGCTATTCTCAAAGCACAAGTCGCAGCAAGGGGCCGAGGTCGAGGAGGACCAGGAGGAAGGGGAAATATTTTCCAGAAAAGGCGATAATGTGAATCCTATTTTAATCACAGTATCATTTTGTACAGTTTTATTTTTCTTTTGAGAAATTGTGTTTTTTGTTTTTTTTGGATTGTTGAAATTGGTGATCTTGTAGTTTTGTTGATTTTGCAATAGTTTTATTTCACTTTTCTCATGTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54458 lncRNA downstream 2748 11645527 ~ 11648165 (-) True G47854
TU54456 lncRNA downstream 9649 11640429 ~ 11641264 (-) False G47853
TU54457 lncRNA downstream 9649 11640429 ~ 11641264 (-) True G47853
TU54414 lncRNA downstream 145951 11503578 ~ 11504962 (-) True G47812
TU54408 lncRNA downstream 168412 11479106 ~ 11482501 (-) True G47806
TU54287 lncRNA upstream 50503 11704927 ~ 11708257 (-) True G47705
TU54465 lncRNA upstream 110810 11765234 ~ 11765587 (-) True G47861
TU54467 lncRNA upstream 115514 11769938 ~ 11770242 (-) True G47863
TU54468 lncRNA upstream 117719 11772143 ~ 11772426 (-) True G47864
TU54472 lncRNA upstream 122987 11777411 ~ 11777636 (-) True G47868
CI01000006_11636228_11638176.mRNA mRNA downstream 12737 11636228 ~ 11638176 (-) True CI01000006_11636228_11638176
CI01000006_11627878_11631177.mRNA mRNA downstream 19736 11627194 ~ 11631177 (-) True CI01000006_11627878_11631177
CI01000006_11596063_11609407.mRNA mRNA downstream 41506 11595639 ~ 11609407 (-) True CI01000006_11596063_11609407
CI01000006_11530728_11535297.mRNA mRNA downstream 115013 11530366 ~ 11535900 (-) True CI01000006_11530728_11535297
CI01000006_11459706_11462546.mRNA mRNA downstream 188308 11459288 ~ 11462605 (-) True CI01000006_11459706_11462546
CI01000006_11659293_11664444.mRNA mRNA upstream 4509 11658933 ~ 11666250 (-) True CI01000006_11659293_11664444
CI01000006_11672314_11695885.mRNA mRNA upstream 17430 11671854 ~ 11695920 (-) True CI01000006_11672314_11695885
CI01000006_11715016_11740679.mRNA mRNA upstream 60281 11714705 ~ 11740763 (-) True CI01000006_11715016_11740679
CI01000006_11753992_11763149.mRNA mRNA upstream 99304 11753728 ~ 11763149 (-) True CI01000006_11753992_11763149
CI01000006_11779363_11781944.mRNA mRNA upstream 124901 11779325 ~ 11781988 (-) True CI01000006_11779363_11781944
TU54208 other downstream 617786 11030911 ~ 11033127 (-) True G47658
TU53918 other downstream 1162478 10488238 ~ 10488435 (-) True G47397
TU52113 other downstream 4139957 7510829 ~ 7510956 (-) True G45821
TU51023 other downstream 4674041 6973450 ~ 6976872 (-) False CI01000006_06974359_06976736
TU55106 other upstream 679985 12334409 ~ 12346649 (-) True G48451
TU55104 other upstream 691768 12346192 ~ 12346649 (-) False G48451
TU55105 other upstream 691835 12346259 ~ 12346649 (-) True G48451
TU55095 other upstream 696335 12350759 ~ 12529810 (-) False G48450
TU55097 other upstream 914881 12569305 ~ 12571925 (-) False CI01000006_12569291_12581457

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00018855 True 787 mRNA 0.47 4 CM030135.1 22861091 ~ 22862779 (-)