Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00014031 |
| length | 865 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.51 |
| exon number | 8 |
| gene id | XLOC_007088 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007125.7 |
| NCBI id | CM002898.2 |
| chromosome length | 52660232 |
| location | 5835134 ~ 5860184 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030433 | ubiquitin-dependent ERAD pathway | biological_process |
| GO:0140042 | lipid droplet formation | biological_process |
| GO:0071712 | ER-associated misfolded protein catabolic process | biological_process |
| GO:0034389 | lipid droplet organization | biological_process |
| GO:1990044 | protein localization to lipid droplet | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0000839 | Hrd1p ubiquitin ligase ERAD-L complex | cellular_component |
| GO:0005811 | lipid droplet | cellular_component |
| GO:0030176 | integral component of endoplasmic reticulum membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0043130 | ubiquitin binding | molecular_function |
| GO:0097027 | ubiquitin-protein transferase activator activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-3375 | Predicted to enable ubiquitin binding activity and ubiquitin-protein transferase activator activity. Predicted to be involved in ERAD pathway; lipid droplet formation; and protein localization to lipid droplet. Predicted to be located in lipid droplet. Predicted to be part of Hrd1p ubiquitin ligase ERAD-L complex. Predicted to be active in membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human AUP1 (AUP1 lipid droplet regulating VLDL assembly factor). |
| ensembl_id | ENSDART00000140260 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00014029 | lncRNA | upstream | 14634 | 5816332 ~ 5820524 (+) | True | XLOC_007087 |
| TCONS_00014028 | lncRNA | upstream | 123529 | 5690650 ~ 5711629 (+) | True | XLOC_007086 |
| TCONS_00016121 | lncRNA | upstream | 420369 | 5413579 ~ 5414789 (+) | True | XLOC_007084 |
| TCONS_00014024 | lncRNA | upstream | 704244 | 5128881 ~ 5130914 (+) | False | XLOC_007082 |
| TCONS_00015945 | lncRNA | upstream | 704244 | 5129847 ~ 5130914 (+) | True | XLOC_007082 |
| TCONS_00016122 | lncRNA | downstream | 8829 | 5861494 ~ 5864890 (+) | False | XLOC_007089 |
| TCONS_00016123 | lncRNA | downstream | 8830 | 5861495 ~ 5864890 (+) | False | XLOC_007089 |
| TCONS_00015946 | lncRNA | downstream | 64614 | 5917279 ~ 5918105 (+) | True | XLOC_007090 |
| TCONS_00015947 | lncRNA | downstream | 71928 | 5924593 ~ 5925023 (+) | True | XLOC_007091 |
| TCONS_00014043 | lncRNA | downstream | 386320 | 6238985 ~ 6242137 (+) | False | XLOC_007096 |
| TCONS_00014025 | mRNA | upstream | 443975 | 5383060 ~ 5391183 (+) | False | XLOC_007083 |
| TCONS_00014026 | mRNA | upstream | 446158 | 5385855 ~ 5389000 (+) | True | XLOC_007083 |
| TCONS_00014023 | mRNA | upstream | 715661 | 5117072 ~ 5119497 (+) | True | XLOC_007081 |
| TCONS_00014022 | mRNA | upstream | 1020694 | 4807207 ~ 4814464 (+) | True | XLOC_007079 |
| TCONS_00014021 | mRNA | upstream | 1027235 | 4796168 ~ 4807923 (+) | False | XLOC_007079 |
| TCONS_00014034 | mRNA | downstream | 8770 | 5861435 ~ 5865146 (+) | False | XLOC_007089 |
| TCONS_00014035 | mRNA | downstream | 8839 | 5861504 ~ 5863142 (+) | True | XLOC_007089 |
| TCONS_00014036 | mRNA | downstream | 84331 | 5936996 ~ 5938248 (+) | False | XLOC_007092 |
| TCONS_00014037 | mRNA | downstream | 84445 | 5937110 ~ 6004780 (+) | True | XLOC_007092 |
| TCONS_00014039 | mRNA | downstream | 306497 | 6159162 ~ 6175947 (+) | False | XLOC_007094 |
| TCONS_00014027 | other | upstream | 379335 | 5455707 ~ 5455823 (+) | True | XLOC_007085 |
| TCONS_00014020 | other | upstream | 1530988 | 4304052 ~ 4304170 (+) | True | XLOC_007078 |
| TCONS_00014015 | other | upstream | 1676731 | 4151374 ~ 4158427 (+) | False | XLOC_007075 |
| TCONS_00014012 | other | upstream | 2077386 | 3757655 ~ 3757772 (+) | True | XLOC_007070 |
| TCONS_00013996 | other | upstream | 2787105 | 3038582 ~ 3048053 (+) | False | XLOC_007060 |
| TCONS_00014038 | other | downstream | 254374 | 6107039 ~ 6107155 (+) | True | XLOC_007093 |
| TCONS_00014092 | other | downstream | 2490829 | 8343494 ~ 8431275 (+) | False | XLOC_007124 |
| TCONS_00014111 | other | downstream | 3203406 | 9056071 ~ 9066756 (+) | False | XLOC_007135 |
| TCONS_00014112 | other | downstream | 3206539 | 9059204 ~ 9061587 (+) | False | XLOC_007135 |
| TCONS_00014115 | other | downstream | 3447864 | 9300529 ~ 9314289 (+) | True | XLOC_007137 |
