Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00014140 |
| length | 581 |
| lncRNA type | retained_intron |
| GC content | 0.40 |
| exon number | 3 |
| gene id | XLOC_007151 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007125.7 |
| NCBI id | CM002898.2 |
| chromosome length | 52660232 |
| location | 10656975 ~ 10737898 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005524 | ATP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030912-11 | Predicted to enable several functions, including ATP binding activity; DNA helicase activity; and metal ion binding activity. Predicted to act upstream of or within DNA repair. Predicted to be located in chromosome, telomeric region and nucleus. Used to study alpha thalassemia-X-linked intellectual disability syndrome. Human ortholog(s) of this gene implicated in X-linked mental retardation-hypotonic facies syndrome-1; alpha thalassemia-X-linked intellectual disability syndrome; alpha-thalassemia myelodysplasia syndrome; high grade glioma; and lung small cell carcinoma. Orthologous to human ATRX (ATRX chromatin remodeler). |
| ensembl_id | ENSDART00000146030 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00016135 | lncRNA | upstream | 235894 | 10490798 ~ 10492241 (+) | True | XLOC_007147 |
| TCONS_00016134 | lncRNA | upstream | 1150053 | 9570818 ~ 9578082 (+) | True | XLOC_007143 |
| TCONS_00014123 | lncRNA | upstream | 1228915 | 9485067 ~ 9499220 (+) | False | XLOC_007141 |
| TCONS_00014117 | lncRNA | upstream | 1300196 | 9422429 ~ 9427939 (+) | True | XLOC_007138 |
| TCONS_00016133 | lncRNA | upstream | 1661379 | 9059204 ~ 9066756 (+) | False | XLOC_007135 |
| TCONS_00015954 | lncRNA | downstream | 67732 | 10798882 ~ 10799415 (+) | True | XLOC_007152 |
| TCONS_00016137 | lncRNA | downstream | 115310 | 10846460 ~ 10847557 (+) | False | XLOC_007154 |
| TCONS_00016136 | lncRNA | downstream | 115310 | 10846460 ~ 10847557 (+) | True | XLOC_007154 |
| TCONS_00014143 | lncRNA | downstream | 223198 | 10954348 ~ 10958743 (+) | False | XLOC_007155 |
| TCONS_00014144 | lncRNA | downstream | 223198 | 10954348 ~ 10974650 (+) | True | XLOC_007155 |
| TCONS_00014135 | mRNA | upstream | 71924 | 10624911 ~ 10656211 (+) | False | XLOC_007150 |
| TCONS_00014136 | mRNA | upstream | 79578 | 10625112 ~ 10648557 (+) | False | XLOC_007150 |
| TCONS_00014137 | mRNA | upstream | 91942 | 10625134 ~ 10636193 (+) | True | XLOC_007150 |
| TCONS_00014134 | mRNA | upstream | 126841 | 10596628 ~ 10601294 (+) | True | XLOC_007149 |
| TCONS_00014133 | mRNA | upstream | 128970 | 10567104 ~ 10599165 (+) | False | XLOC_007149 |
| TCONS_00014142 | mRNA | downstream | 223195 | 10954345 ~ 10974650 (+) | False | XLOC_007155 |
| TCONS_00014145 | mRNA | downstream | 250553 | 10981703 ~ 11070156 (+) | True | XLOC_007156 |
| TCONS_00014146 | mRNA | downstream | 372568 | 11103718 ~ 11268375 (+) | True | XLOC_007157 |
| TCONS_00014147 | mRNA | downstream | 558701 | 11289851 ~ 11304057 (+) | False | XLOC_007158 |
| TCONS_00014148 | mRNA | downstream | 559678 | 11290828 ~ 11301129 (+) | True | XLOC_007158 |
| TCONS_00014115 | other | upstream | 1413846 | 9300529 ~ 9314289 (+) | True | XLOC_007137 |
| TCONS_00014111 | other | upstream | 1661379 | 9056071 ~ 9066756 (+) | False | XLOC_007135 |
| TCONS_00014112 | other | upstream | 1666548 | 9059204 ~ 9061587 (+) | False | XLOC_007135 |
| TCONS_00014092 | other | upstream | 2296860 | 8343494 ~ 8431275 (+) | False | XLOC_007124 |
| TCONS_00014038 | other | upstream | 4620980 | 6107039 ~ 6107155 (+) | True | XLOC_007093 |
| TCONS_00014141 | other | downstream | 85147 | 10816297 ~ 10816413 (+) | True | XLOC_007153 |
| TCONS_00014154 | other | downstream | 726379 | 11457529 ~ 11459056 (+) | False | XLOC_007162 |
| TCONS_00014158 | other | downstream | 1197393 | 11928543 ~ 11929156 (+) | False | XLOC_007163 |
| TCONS_00014169 | other | downstream | 1458687 | 12189837 ~ 12203193 (+) | True | XLOC_007167 |
| TCONS_00014206 | other | downstream | 4105923 | 14837073 ~ 14837270 (+) | True | XLOC_007188 |
