RNA id: TCONS_00015960


Basic Information

Item Value
RNA id TCONS_00015960
length 670
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id XLOC_007178
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 14190005 ~ 14197482 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttggttttaaatgtaaacaaatataaattaatgatTTTCACAAATTGTTCCACTTCTGGGCAGAACCAACCATTAATTACCACTGCCCAAGGTCAACAAATAAATTTAGTGTCCAGCTATAAGTATTTAGGCTTTCTGCTCGATCAGGAGCTTTCTTTCAAAAACACATAGCAAATTTTGTTAGAAAATTGAGATTTAAGCTTGGATTTTACTATCGAAATGCATCCTGCTTTTCTCTTAAAGCTCGCAAACATttgcaaacaaatgtttgcaacATTTTTACCATTGATTGATTGGTGATggttaacagtgttatgcatgcttcaaacaaatgtcttCAGCCTTTAAACTCCATCTATCACAGTGCTCTAAGGTTTGTTACAGGCTGTCAAAGACTTACTCACAATTGTAAATTGTATGCCAAAGCTGAGTAGCCTTCTCTGTATGTAAGAAGGTACACCCACTGGATGACTCTGGTCTACAAGGCTCTTCTGGGACTGGTGCCTTCATAcctatgttgcatggcttcTCCATTAGTCTAAAAGCCAGTATGCCCTACGCTCAAATGAATCTTATAATGTAACTGTTCCCTGGGTTCGAACTGAAATAGGGAAGCAAGCCTTTAGACATGCCGCCCCCTCATCAtggaatactcttcagtctgaactaa

Function

GO:

id name namespace
GO:0031224 intrinsic component of membrane cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00014186 lncRNA upstream 144309 14044646 ~ 14045696 (+) True XLOC_007177
TCONS_00016144 lncRNA upstream 179904 13958416 ~ 14010101 (+) False XLOC_007175
TCONS_00015958 lncRNA upstream 188893 13958482 ~ 14001112 (+) False XLOC_007175
TCONS_00016143 lncRNA upstream 189946 13958416 ~ 14000059 (+) False XLOC_007175
TCONS_00016145 lncRNA upstream 190138 13958479 ~ 13999867 (+) False XLOC_007175
TCONS_00016147 lncRNA downstream 500852 14698334 ~ 14740809 (+) True XLOC_007184
TCONS_00016148 lncRNA downstream 524542 14722024 ~ 14725486 (+) True XLOC_007185
TCONS_00016149 lncRNA downstream 588008 14785490 ~ 14806022 (+) True XLOC_007186
TCONS_00014199 lncRNA downstream 621455 14818937 ~ 14822685 (+) True XLOC_007187
TCONS_00014204 lncRNA downstream 637830 14835312 ~ 14841159 (+) False XLOC_007188
TCONS_00014185 mRNA upstream 95599 14043793 ~ 14094406 (+) False XLOC_007177
TCONS_00014184 mRNA upstream 121260 14027427 ~ 14068745 (+) False XLOC_007177
TCONS_00014183 mRNA upstream 346340 13752432 ~ 13843665 (+) True XLOC_007174
TCONS_00014180 mRNA upstream 664547 13453130 ~ 13525458 (+) False XLOC_007173
TCONS_00014181 mRNA upstream 665377 13454840 ~ 13524628 (+) False XLOC_007173
TCONS_00014189 mRNA downstream 27248 14224730 ~ 14532861 (+) False XLOC_007179
TCONS_00014188 mRNA downstream 27248 14224730 ~ 14532861 (+) False XLOC_007179
TCONS_00014187 mRNA downstream 27248 14224730 ~ 14532861 (+) False XLOC_007179
TCONS_00014190 mRNA downstream 27566 14225048 ~ 14534457 (+) False XLOC_007179
TCONS_00014191 mRNA downstream 117410 14314892 ~ 14532861 (+) False XLOC_007179
TCONS_00014169 other upstream 1986812 12189837 ~ 12203193 (+) True XLOC_007167
TCONS_00014158 other upstream 2260849 11928543 ~ 11929156 (+) False XLOC_007163
TCONS_00014154 other upstream 2730949 11457529 ~ 11459056 (+) False XLOC_007162
TCONS_00014141 other upstream 3373592 10816297 ~ 10816413 (+) True XLOC_007153
TCONS_00014115 other upstream 4875716 9300529 ~ 9314289 (+) True XLOC_007137
TCONS_00014206 other downstream 639591 14837073 ~ 14837270 (+) True XLOC_007188
TCONS_00014209 other downstream 647434 14844916 ~ 14846159 (+) True XLOC_007189
TCONS_00014213 other downstream 712071 14909553 ~ 14909670 (+) True XLOC_007192
TCONS_00014275 other downstream 4601952 18799434 ~ 18799558 (+) True XLOC_007232
TCONS_00014313 other downstream 7041200 21238682 ~ 21245773 (+) False XLOC_007253

Expression Profile

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