RNA id: TCONS_00014195


Basic Information

Item Value
RNA id TCONS_00014195
length 2262
RNA type mRNA
GC content 0.44
exon number 4
gene id XLOC_007182
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 14608099 ~ 14622984 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAACTCATGCAACAGCAGCATCCTGTGTCCATTCTGTTTTGTTACAAGATAGTAGTGAGGAAAAACAGTGGAAATGCAGCAACAAAACATACGTCTGTCCTGAAATAAAGTCAACTATGGCGCTTTGCCTGTGGCTATTTTTGGTCCTGCCAATATGCTGCTGGTGTCAGGGGGCAGTGGACCTAGGAGACAGTGGTGTTTTTCAGCCCCAGAGTGCCCTCACTGACATGGAGTTTGCCTCTGTCAGCACCTACCGCGGCCCTGGAAACACTGACCCTCGCCCAAATAAAGAGCTGCCAATCCTTCTATGGTGGAGCTCCAATCTGTTCCCACACTTCCCTGGAGATACAGAGCGTGTGGACTGTGCCCACTCATCCTGTCTAGTCACAAGCAACCGTAAGGTTCAGCTGTATCGCCGCACGGCATCTATTATTTTCTATGGCACAGACTTCCGGGCATATGAAGCTCCGCTGCCGCGGTTACCTCATCAAACCTGGGCACTTTTTCATGAAGAGTCACCCATGAATAACTATCTTCTGTCTCACAGTGTTGGAATCAGATTGTTTAACTACACGGCCACATTTAGGAGGGAGTCAGACTACCCATTAACACTGCAGTGGTTGCCCTCGCTGGATTATCTTCTGGCACCTACGGCTATCTCTCTGCAAGAAAAGAACCACTGGAGACAGGCTGGTCTAGCACCTGTTCTCTACATGCAGTCCCACTGCGATGTGCCTTCAGATCGGGACCGCTTTGTTCAAGAGCTGATGAAATATATAGAGATTGACTCATACGGGAAGTGCCTTAACAACAAACCCCTGCCTGAATATCTGGAGGACACCAGCACAGCCACTAGTGAGGACCGGCGCTTCATGAGTTTTGTGGCCCGTTATAAGTTCCACCTGGCCCTGGAGAATGGCCTTTGTCCAGACTATATGACTGAGAAGCTCTGGCGACCCATGCACCAGGGCTGTGTGCCTATTTACAGGGGCTCAACAACGGTAGCCGACTGGCTCCCAAACAATCATTCCGCCATTCTCGTTGAGGATTTTTCCACTCCACGAGAGCTCGCCGACTTCATCAAAGCTTTGGATCAAGATGACGTGGAGTATTTGCGTTATCTAAAGTACAAAACACCCAGTGAGATCACTAACTTGCGTTTGCTGGAGGGGTTGGAGAGCAGAGAGTGGGGCGTCAATGACATGAGTAAACCAAACTACTTGAACGGTTTTGAGTGTTTTGTGTGTGACAAAGAAAATGAACGTCTGGCAGCGAGAAAAGCTCACAGAAAGAACCCGAAACAGAACCAACCTCCTCAACCAAAGATGGCCAACAGCTCACACATGGGCTGCCCGCTACCCAGTCCAGGATACGGACCTGTGGAAAATGTTGAACCAAATGATAGCTGGCTCCAGATGTGGCCGCAGGACTACTGGCAGAGTCTGGATCAGGCAGAGGGTTTGGAGTCGCTCATCAGACACAATGTTTCCGAGCCATCGTTACTGTGGCAGCACATCCAGAGCATCGCTGTGAGGAGAGCCAGAGGCCTATCAAATGACTCGAGGTGACGGCTCACATCAAAACTTCCTCTGACAGCTCAAGACTCAACATATTTTTGGCAGCAGGTTTAATTTGACAAGCCACCCAAGGCTGATGTGCCGCTGTCAGAGTTTGTGCAATTTCTAATTCATCTTATGTTTAAATTCTCCTTTGAGTATtgtatattatgtatttataatgaatgtttttttagcttttcaAAGCGCTGATATTGATTGCCTCACAAAATCACTCAGGCTTGCTTGTCAGAAGATCTCATAGAAGAAAATGACTGCAGTTATGATGAAATCTTTGGCTAATAGTTAATCTGAGGTAAAACGTGTCATATTTTTCAttacaaaagggaaaaaaaaacatggcttaTTTTTAGGATGCTATGATTttaacatgactttttttttttttttttgagagttgaGGACATTATATCCATTCAGAAATGCATTCCTTGAGGAATTTATCATTGAAATGAGCAATTTCCACTTTATAGCTACAAATTATGGTATTGAGACTTGTTATAGAATCACAAAAATGTCCCTTTTTTCATTGATGTGGATACATCATTTCATGATATTCACCTAGATTACTCCAGGAACtgtttatttatagtgtttaagCATCTCAGTATTTCTTAagcagtatttatatatatttttattgcacattcttgtaacaaaaacaataaaagaatACAGCTTTA

Function

GO:

id name namespace
GO:0036065 fucosylation biological_process
GO:0006486 protein glycosylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008417 fucosyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0046920 alpha-(1->3)-fucosyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-728 Predicted to enable alpha-(1->3)-fucosyltransferase activity. Predicted to be involved in fucosylation. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi cisterna membrane and Golgi membrane. Predicted to be integral component of membrane. Orthologous to human FUT11 (fucosyltransferase 11).

Ensembl:

ensembl_id ENSDART00000165099

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00015960 lncRNA upstream 410617 14190005 ~ 14197482 (+) True XLOC_007178
TCONS_00014186 lncRNA upstream 562403 14044646 ~ 14045696 (+) True XLOC_007177
TCONS_00015958 lncRNA upstream 606987 13958482 ~ 14001112 (+) False XLOC_007175
TCONS_00016147 lncRNA downstream 75350 14698334 ~ 14740809 (+) True XLOC_007184
TCONS_00016148 lncRNA downstream 99040 14722024 ~ 14725486 (+) True XLOC_007185
TCONS_00016149 lncRNA downstream 162506 14785490 ~ 14806022 (+) True XLOC_007186
TCONS_00014199 lncRNA downstream 195953 14818937 ~ 14822685 (+) True XLOC_007187
TCONS_00014204 lncRNA downstream 212328 14835312 ~ 14841159 (+) False XLOC_007188
TCONS_00014194 mRNA upstream 11400 14577246 ~ 14596699 (+) True XLOC_007181
TCONS_00014193 mRNA upstream 35058 14568437 ~ 14573041 (+) True XLOC_007180
TCONS_00014190 mRNA upstream 73642 14225048 ~ 14534457 (+) False XLOC_007179
TCONS_00014187 mRNA upstream 75238 14224730 ~ 14532861 (+) False XLOC_007179
TCONS_00014196 mRNA downstream 39132 14662116 ~ 14666556 (+) True XLOC_007183
TCONS_00014197 mRNA downstream 183708 14806692 ~ 14815126 (+) False XLOC_007187
TCONS_00014198 mRNA downstream 183867 14806851 ~ 14828486 (+) False XLOC_007187
TCONS_00014207 mRNA downstream 218701 14841685 ~ 14846166 (+) False XLOC_007189
TCONS_00014208 mRNA downstream 218745 14841729 ~ 14845969 (+) False XLOC_007189
TCONS_00014169 other upstream 2404906 12189837 ~ 12203193 (+) True XLOC_007167
TCONS_00014158 other upstream 2678943 11928543 ~ 11929156 (+) False XLOC_007163
TCONS_00014154 other upstream 3149043 11457529 ~ 11459056 (+) False XLOC_007162
TCONS_00014141 other upstream 3791686 10816297 ~ 10816413 (+) True XLOC_007153
TCONS_00014115 other upstream 5293810 9300529 ~ 9314289 (+) True XLOC_007137
TCONS_00014206 other downstream 214089 14837073 ~ 14837270 (+) True XLOC_007188
TCONS_00014209 other downstream 221932 14844916 ~ 14846159 (+) True XLOC_007189
TCONS_00014213 other downstream 286569 14909553 ~ 14909670 (+) True XLOC_007192
TCONS_00014275 other downstream 4176450 18799434 ~ 18799558 (+) True XLOC_007232
TCONS_00014313 other downstream 6615698 21238682 ~ 21245773 (+) False XLOC_007253

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000110_03802977_03807616.mRNA True 2223 mRNA 0.48 3 CI01000110 3802191 ~ 3807616 (-)
bowfin (Amia calva) AMCG00021453 True 1485 mRNA 0.61 3 CM030130.1 18109078 ~ 18112221 (+)