RNA id: TCONS_00014196


Basic Information

Item Value
RNA id TCONS_00014196
length 2045
RNA type mRNA
GC content 0.33
exon number 5
gene id XLOC_007183
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 14662116 ~ 14666556 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCAGGTCTTCTCTCGGTTAAGATGGCCACTAGTCCCAAAAGACCCTCACTGGGGGCTGTGGCCCCACGTAAAAAAGCCAGTCCAAAATCTGAACTGACAGAAGAGCAAAAGCAGGAAATCCGTGAGGCGTTCGAGCTCTTTGACACTGATGGCTCTGGTTATATTGAGGTGAAGGAGTTAAAGGTGGCCATGAGAGCACTGGGCTTCGAGCCTAAAAAGGAGGAGATCAAGAAAATGATTGCAGAGGTTGATAAAGAGGCTACGGGAAAGATCTCTTTCACTGACTTTCTGTCAGTGATGACCCAAAAAATGGCTGAAAAAGACTCTAAAGAAGAAATTCTTAAGGCTTTTCGGTTGTTTGATGATGATGAGACTGGAAAAATATCTTTCCGGAATCTAAAGCGAGTGGCGAAGGAACTCGGGGAGAACCTCACAGACGAGGAGTTACAGGAAATGATTGATGAAGCAGACAGAGATGGCGATGGGGAAGTAAACCAGCAGGAATTTCTTCGCATCATGAAGAAAACAAGTTTGTACTGAATGTTATCTGAAGCACATTAACTTCTATGTAAACATCATTTTTACTTATGATTTCACACGTTTGTGCACAGTACCATTCCAAAAACCTTGATGCCTGTTGAACCCAGTGGTCATTTCAGATCTGCGTGGGTTTGCCAAATAGCAACACGTCAGCTGTTTACACTATATATTCTCAAATATTATCAGTAAAGATAAAAAGTAGCATATAAACAGAGGTTGTATTGATGAAGTCATTTATTGATGCTTTATGTGGATAAATCTTACCCAGATAGAATTTTTTTGTGGGGTCatgtttcaaaataaattaaataattataaaatacttttCTATAAAAGCTTATTTGTTGATCAGATTAATAACTATcccaaaacactttttaaaaaatgcatttcagAATTACTACTAAAACTCTATATACAGATGAAGACTGTAATGAAGTTAttaccctcctgtgaaatttttgttgtagttgttttttaacagagcaaggacatttttcacagtatttatcattatatttttcttctggaggaggtcttatttcttttggtttggctagaatagatttttttttttatttaaaatgtttacggtcaacattattagcgcccttaagaaatatttttattgattagctactgaacaaaccattgctGTCCAATGACTTCCCTAATTAACCAAGCAAAGCCTTTAAACGGCAACTTAAGCTAAATACTATTAACTTGTTAaaacctagtaaaatattatattttgtcgtcatagcaaaaacaaaagaaattagttactaaaactattatgtttaaaaacgtgtttatatgttgtaaaaatgaataaaatgtttaacaaaaagtaaaaaaattagaaaattgAATAGACATTTCACAGATGGGTtaattcttttgtcttcaactatatatatatatatatatatatatatatatatacatacacatacatatatatttatatatatatatatatatatgaaaaagtcAGTAATGAGAAAGTACGGAGAATAATATTCAACAAAGTGTGCTGCttcatttgaaattaaaatatggatagaaaatgtttaattatCCTATCACTACATGAAGCAATGAAACGaccccaaaaataaacattttatgtgtaatatatatttttacctttTTACGTTTCTGCCTTATGGTTCGTAAAAGTTTTTTATGAACGGTTTAGAGCTCATTAAACAGTCGAACATACTGTTGAAGGATTATTGAAGTTTACACTCCCTTCGGTTGACTTTAGCATCAGTGCTCACTGCGCTTTCAGGGACGTCTGTACTACAAACCCTTCTCTGTGCCTCAGCCGCTTTAGAGGATTTCTCTGCAGTTTTAGTAAACATATACTGTGATCTATAGTAGTATTTTTCCTCTTTGTGTTTCTTTTATGCACCATCTACCTTCAAAATCAGTTTTGTATTTGTGTACATTTGAGACGTTAAGtattgtttaaacaaataaattatattaagcaGCTGGT

Function

GO:

id name namespace
GO:0007099 centriole replication biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0005813 centrosome cellular_component
GO:0005814 centriole cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko03420 Nucleotide excision repair
ko03019 Messenger RNA biogenesis
ko03036 Chromosome and associated proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-091118-94 Predicted to enable calcium ion binding activity. Predicted to be involved in centriole replication; mitotic cell cycle; and nucleotide-excision repair. Predicted to be active in centriole and centrosome. Is expressed in pronephros. Orthologous to human CETN2 (centrin 2).

Ensembl:

ensembl_id ENSDART00000161693

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00015960 lncRNA upstream 464634 14190005 ~ 14197482 (+) True XLOC_007178
TCONS_00014186 lncRNA upstream 616420 14044646 ~ 14045696 (+) True XLOC_007177
TCONS_00015958 lncRNA upstream 661004 13958482 ~ 14001112 (+) False XLOC_007175
TCONS_00016147 lncRNA downstream 31778 14698334 ~ 14740809 (+) True XLOC_007184
TCONS_00016148 lncRNA downstream 55468 14722024 ~ 14725486 (+) True XLOC_007185
TCONS_00016149 lncRNA downstream 118934 14785490 ~ 14806022 (+) True XLOC_007186
TCONS_00014199 lncRNA downstream 152381 14818937 ~ 14822685 (+) True XLOC_007187
TCONS_00014204 lncRNA downstream 168756 14835312 ~ 14841159 (+) False XLOC_007188
TCONS_00014195 mRNA upstream 39132 14608099 ~ 14622984 (+) True XLOC_007182
TCONS_00014194 mRNA upstream 65417 14577246 ~ 14596699 (+) True XLOC_007181
TCONS_00014193 mRNA upstream 89075 14568437 ~ 14573041 (+) True XLOC_007180
TCONS_00014190 mRNA upstream 127659 14225048 ~ 14534457 (+) False XLOC_007179
TCONS_00014197 mRNA downstream 140136 14806692 ~ 14815126 (+) False XLOC_007187
TCONS_00014198 mRNA downstream 140295 14806851 ~ 14828486 (+) False XLOC_007187
TCONS_00014207 mRNA downstream 175129 14841685 ~ 14846166 (+) False XLOC_007189
TCONS_00014208 mRNA downstream 175173 14841729 ~ 14845969 (+) False XLOC_007189
TCONS_00014210 mRNA downstream 180748 14847304 ~ 14865048 (+) False XLOC_007190
TCONS_00014169 other upstream 2458923 12189837 ~ 12203193 (+) True XLOC_007167
TCONS_00014158 other upstream 2732960 11928543 ~ 11929156 (+) False XLOC_007163
TCONS_00014154 other upstream 3203060 11457529 ~ 11459056 (+) False XLOC_007162
TCONS_00014141 other upstream 3845703 10816297 ~ 10816413 (+) True XLOC_007153
TCONS_00014115 other upstream 5347827 9300529 ~ 9314289 (+) True XLOC_007137
TCONS_00014206 other downstream 170517 14837073 ~ 14837270 (+) True XLOC_007188
TCONS_00014209 other downstream 178360 14844916 ~ 14846159 (+) True XLOC_007189
TCONS_00014213 other downstream 242997 14909553 ~ 14909670 (+) True XLOC_007192
TCONS_00014275 other downstream 4132878 18799434 ~ 18799558 (+) True XLOC_007232
TCONS_00014313 other downstream 6572126 21238682 ~ 21245773 (+) False XLOC_007253

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000110_03766267_03768570.mRNA True 609 mRNA 0.44 5 CI01000110 3766237 ~ 3768570 (-)