RNA id: TCONS_00014282


Basic Information

Item Value
RNA id TCONS_00014282
length 480
RNA type mRNA
GC content 0.53
exon number 2
gene id XLOC_007239
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 20342553 ~ 20737102 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTGACCGCCTCCAGCGAGCCCTGACTCCGCCTTCCGCAGGGCTGCGTGTCGCTGAGCGGAGAGAGGAGAGAGGCAGCGGCAGTGCGAGCTGCGCCGCGCTTCAGTGAGGGACACACTCAGTTCCTGCATATGCGGCCACCGGCACCTCACTGAAACACACCGACAATGGACCTATTCGAGTTTGACTTCTTCAGGGACTGGGAGCTGGAGCAACAGTGCTTTCCTTACCCCATGTGGTGGACATTACCCTCTAGACTGACAACTTCTCTAGTTTCCTCCAAACCGGGCCTGCTCCGTGTGTGATGCCAGATGACTGTTATTTGGACCCCTCTGTAGCCTGAACACAGACCCCTGAAAGGTCaccgaaggaaaaaaaaatcacttagaaaaaaaagacaaagtgtGAGAGAAACAAGAGTTGGCTGGCAACAAGGCATGCGCTAATAGCACAATAAAACAATACTGTTAAGCGGCCCTT

Function

GO:

id name namespace
GO:0010468 regulation of gene expression biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0002151 G-quadruplex RNA binding molecular_function

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-110411-190 Predicted to enable G-quadruplex RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be located in nucleus. Predicted to be active in nuclear speck. Is expressed in intermediate cell mass of mesoderm. Human ortholog(s) of this gene implicated in X-linked intellectual developmental disorder 109. Orthologous to human AFF2 (AF4/FMR2 family member 2).

Ensembl:

ensembl_id ENSDART00000167637

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016194 lncRNA upstream 73178 20268011 ~ 20269394 (+) False XLOC_007238
TCONS_00016195 lncRNA upstream 73178 20268793 ~ 20269394 (+) True XLOC_007238
TCONS_00014279 lncRNA upstream 531087 19806641 ~ 19811485 (+) True XLOC_007236
TCONS_00014278 lncRNA upstream 533448 19806641 ~ 19809124 (+) False XLOC_007236
TCONS_00015968 lncRNA upstream 626234 19712262 ~ 19716338 (+) True XLOC_007235
TCONS_00016196 lncRNA downstream 319473 20730546 ~ 20737102 (+) True XLOC_007239
TCONS_00015969 lncRNA downstream 348556 20759629 ~ 20761559 (+) True XLOC_007240
TCONS_00016197 lncRNA downstream 430471 20841544 ~ 20845040 (+) False XLOC_007241
TCONS_00016198 lncRNA downstream 430475 20841548 ~ 20845040 (+) True XLOC_007241
TCONS_00014294 lncRNA downstream 586656 20997729 ~ 20999989 (+) True XLOC_007245
TCONS_00014280 mRNA upstream 151291 20156477 ~ 20191281 (+) True XLOC_007237
TCONS_00014277 mRNA upstream 1080839 19258702 ~ 19261733 (+) True XLOC_007234
TCONS_00014276 mRNA upstream 1081306 19258702 ~ 19261266 (+) False XLOC_007234
TCONS_00014274 mRNA upstream 1552791 18785727 ~ 18789781 (+) True XLOC_007231
TCONS_00014273 mRNA upstream 1555515 18782610 ~ 18787057 (+) False XLOC_007231
TCONS_00014283 mRNA downstream 481992 20893065 ~ 20898499 (+) True XLOC_007242
TCONS_00014284 mRNA downstream 489916 20900989 ~ 20908036 (+) True XLOC_007243
TCONS_00014285 mRNA downstream 500237 20911310 ~ 20917866 (+) True XLOC_007244
TCONS_00014286 mRNA downstream 507628 20918701 ~ 20973438 (+) False XLOC_007245
TCONS_00014287 mRNA downstream 507636 20918709 ~ 20966417 (+) False XLOC_007245
TCONS_00014275 other upstream 1543014 18799434 ~ 18799558 (+) True XLOC_007232
TCONS_00014213 other upstream 5432902 14909553 ~ 14909670 (+) True XLOC_007192
TCONS_00014209 other upstream 5496413 14844916 ~ 14846159 (+) True XLOC_007189
TCONS_00014206 other upstream 5505302 14837073 ~ 14837270 (+) True XLOC_007188
TCONS_00014169 other upstream 8139379 12189837 ~ 12203193 (+) True XLOC_007167
TCONS_00014313 other downstream 827609 21238682 ~ 21245773 (+) False XLOC_007253
TCONS_00014315 other downstream 1260034 21671107 ~ 21678917 (+) False XLOC_007255
TCONS_00014324 other downstream 1328543 21739616 ~ 21745484 (+) True XLOC_007257
TCONS_00014351 other downstream 1905161 22316234 ~ 22319001 (+) False XLOC_007271
TCONS_00014367 other downstream 2665054 23076127 ~ 23155656 (+) False XLOC_007280

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU368539 True 16996 lncRNA 0.37 2 CI01000110 2741071 ~ 2758086 (+)