RNA id: TCONS_00014286


Basic Information

Item Value
RNA id TCONS_00014286
length 623
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_007245
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 20918701 ~ 21001756 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGGAGAATgtgattagtaaaaaaaaaaggtgtctGATGTTTCGCTCGCTTAAGGATGGCCAGATATCTCTAGGATTTCCTTGGCTTTTGATTGTGACATCATGGCCTCAGGATCTCCAGATGTCACAGCCGCTAATGAACCATCAGAAGCCACAGAAGAGTGTTCAGGGAAGAAGAAGTCCAAATTTCAGACGTTCAAGAATTTTTTCGTGAAGAAAAAGAGGAAGGAAAGTCTGTCTCCGTCGAGTGAGAGTGGATTGAAGGCCAGTCAATCTAGTGATGACGTTAACACTTCAGAGCCAAGTATCAGCCATGCTAAAAGCGACAATGACCCAGGCTCCAAGATCAACTTGGGAAACAAAGCCATGTCACATGACAGTGTCTTCGTCTCTGATTCGCCGTCTTCAGAGAATAACGAAGGTCTGGGCACATCACAGGACAGCTTACATGGAAAAGTGAAATCCTTACAGCTGCAGCTGAAGCAAGCCATTCGTCTGGGTTCTCCACCGGCACTGCTCTGTGGGAGGAAAGCGGAGGACACTGGGGCTTTTTCTGAAGATGATGGTCTTCCCTGCAGCCCGCCAGACTACTCCAGCCTCCACACTGTACTGGCTACACCTCTT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9832 Is expressed in several structures, including head mesenchyme; margin; mesoderm; neural keel; and tail bud.

Ensembl:

ensembl_id ENSDART00000144736

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016197 lncRNA upstream 73661 20841544 ~ 20845040 (+) False XLOC_007241
TCONS_00016198 lncRNA upstream 73661 20841548 ~ 20845040 (+) True XLOC_007241
TCONS_00015969 lncRNA upstream 157142 20759629 ~ 20761559 (+) True XLOC_007240
TCONS_00016196 lncRNA upstream 181599 20730546 ~ 20737102 (+) True XLOC_007239
TCONS_00016195 lncRNA upstream 649307 20268793 ~ 20269394 (+) True XLOC_007238
TCONS_00014294 lncRNA downstream 24291 20997729 ~ 20999989 (+) True XLOC_007245
TCONS_00014300 lncRNA downstream 133127 21106565 ~ 21111641 (+) False XLOC_007250
TCONS_00014310 lncRNA downstream 251282 21224720 ~ 21228140 (+) False XLOC_007252
TCONS_00014311 lncRNA downstream 251977 21225415 ~ 21230151 (+) True XLOC_007252
TCONS_00015970 lncRNA downstream 319676 21293114 ~ 21293498 (+) True XLOC_007254
TCONS_00014285 mRNA upstream 835 20911310 ~ 20917866 (+) True XLOC_007244
TCONS_00014284 mRNA upstream 10665 20900989 ~ 20908036 (+) True XLOC_007243
TCONS_00014283 mRNA upstream 20202 20893065 ~ 20898499 (+) True XLOC_007242
TCONS_00014281 mRNA upstream 181776 20342553 ~ 20736925 (+) False XLOC_007239
TCONS_00014282 mRNA upstream 507628 20342572 ~ 20411073 (+) False XLOC_007239
TCONS_00014295 mRNA downstream 31934 21005372 ~ 21007653 (+) True XLOC_007246
TCONS_00014296 mRNA downstream 34519 21007957 ~ 21010327 (+) True XLOC_007247
TCONS_00014297 mRNA downstream 65024 21038462 ~ 21041848 (+) True XLOC_007248
TCONS_00014298 mRNA downstream 68740 21042178 ~ 21044540 (+) True XLOC_007249
TCONS_00014299 mRNA downstream 133006 21106444 ~ 21115194 (+) False XLOC_007250
TCONS_00014275 other upstream 2119143 18799434 ~ 18799558 (+) True XLOC_007232
TCONS_00014213 other upstream 6009031 14909553 ~ 14909670 (+) True XLOC_007192
TCONS_00014209 other upstream 6072542 14844916 ~ 14846159 (+) True XLOC_007189
TCONS_00014206 other upstream 6081431 14837073 ~ 14837270 (+) True XLOC_007188
TCONS_00014169 other upstream 8715508 12189837 ~ 12203193 (+) True XLOC_007167
TCONS_00014313 other downstream 265244 21238682 ~ 21245773 (+) False XLOC_007253
TCONS_00014315 other downstream 697669 21671107 ~ 21678917 (+) False XLOC_007255
TCONS_00014324 other downstream 766178 21739616 ~ 21745484 (+) True XLOC_007257
TCONS_00014351 other downstream 1342796 22316234 ~ 22319001 (+) False XLOC_007271
TCONS_00014367 other downstream 2102689 23076127 ~ 23155656 (+) False XLOC_007280

Expression Profile

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