RNA id: TCONS_00014295


Basic Information

Item Value
RNA id TCONS_00014295
length 1411
RNA type mRNA
GC content 0.46
exon number 7
gene id XLOC_007246
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 21005372 ~ 21007653 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATATTTTTCTGACAGTAAAAGGTCGTCGACGAGGCAATGTAGTGTCTACACCACAGCCTACGTCCGACATGGATTTATATGATCCACAGCCAGGCCCATCCGGCCTCCAGTACACGGCTGTACAGGATCATACTGATACTCAATCGGGTCCATCTAGTGTCAATCCAACAACTTCTGACACAAATACAGCTTATCCCGAGGCTGAAGagaaacaaacaaaatcaaagatGAACAAAATCAGCGCCTTCTTCAAAAGAAGGTGGCGAGCTGTAAAACGTGCATCAACATCGCACAAGAAGAACAACAAAATGGCTCCACAGCTCGACAACAATATTTCTATTTTTGAGCCATTGACCCTGAGAGATCCCCTAGAAGATCTGCAATCTGGTCTATCCATCCCACATCGAGATCCAGATGTTCCTGAGAAAACACTTCTAGAAGAATGTGACCTTCTGCTGAAGGGCTTGCAGAATCTGAATGATCCTCCAGCCCCATCAACATTTCCAGGTCCTGCTCTCAAGCAAAGATGTATTGGAAATCCAACTTGGCTAAGAACGGTTTCCAATCCAGGACCATGTACCCTTCCACTTTCTGAGCTTTATGAAGTAGAAGAGGAAATTGGAAAAGGATTCTTCGGCAGAGTGTGCAAAGGGATCCGGAAATCTGATGGCAAACAGGTCGCCATCAAGTTTACAGCGAAGCGGGAGACAGACCGGTATATCACAATTCCCGGTGTTGCCGAGCCACTGTTCGTGGAAGTGGCTCTAAACCTGCTGCTAAATCAACCTCCTCTGAGTCCATACATCGTGCACATGCTGGACTGGTTTGAAGAGCCAGATCAATTCATcctcatcctggaatactctCAACCTTCCAAAGAGCTCTTCAAGTTTTTCGTTAAGGAAAAGCCTAGTGAATCTCAGGCACGTAGCTTGATGTACCAAGCGGTGCTTGGAGCGAAGCACTGTCTAGACAGAGGTGTCTTACACCGTGACATCAAGCTGGACAACTACGTGATCAACACTGAGACAAACCAAGTCAAACTAATTGACTTTGGCTGCGGTGACATAGTCAAAGATGACTATAATGGTCAATTCATTGGATTTGCCTGCCCACCTGAATACTTTGTGGATTTGAAGTATGATGCAGAATCATTAACCGTCTGGTCTCTGGGCATAATGATGTACGGGATGGTCTGCAAATATCCGGCCAGTACAGCTGAAGTGCACAATCTGACTTTTGATGCCCAAGTATCCGCAGAATTCCAGGATTTGATCAAACGCTGCCTGGCTTATGAACCATCTGAGAGAGCCACTATGGAGGAGGTCCTGCAGCATGAATGGTTTCAGCAGGAACAAATTCCAGGACCAACACCGAAGACAGGTAATATgacttatagaccattttga

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-224 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000170638

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00014294 lncRNA upstream 5383 20997729 ~ 20999989 (+) True XLOC_007245
TCONS_00016197 lncRNA upstream 160332 20841544 ~ 20845040 (+) False XLOC_007241
TCONS_00016198 lncRNA upstream 160332 20841548 ~ 20845040 (+) True XLOC_007241
TCONS_00015969 lncRNA upstream 243813 20759629 ~ 20761559 (+) True XLOC_007240
TCONS_00016196 lncRNA upstream 268270 20730546 ~ 20737102 (+) True XLOC_007239
TCONS_00014300 lncRNA downstream 98912 21106565 ~ 21111641 (+) False XLOC_007250
TCONS_00014310 lncRNA downstream 217067 21224720 ~ 21228140 (+) False XLOC_007252
TCONS_00014311 lncRNA downstream 217762 21225415 ~ 21230151 (+) True XLOC_007252
TCONS_00015970 lncRNA downstream 285461 21293114 ~ 21293498 (+) True XLOC_007254
TCONS_00014320 lncRNA downstream 678571 21686224 ~ 21693391 (+) True XLOC_007256
TCONS_00014289 mRNA upstream 3616 20929586 ~ 21001756 (+) False XLOC_007245
TCONS_00014288 mRNA upstream 3616 20929586 ~ 21001756 (+) False XLOC_007245
TCONS_00014292 mRNA upstream 3616 20941038 ~ 21001756 (+) False XLOC_007245
TCONS_00014293 mRNA upstream 3616 20941534 ~ 21001756 (+) False XLOC_007245
TCONS_00014291 mRNA upstream 4787 20929864 ~ 21000585 (+) False XLOC_007245
TCONS_00014296 mRNA downstream 304 21007957 ~ 21010327 (+) True XLOC_007247
TCONS_00014297 mRNA downstream 30809 21038462 ~ 21041848 (+) True XLOC_007248
TCONS_00014298 mRNA downstream 34525 21042178 ~ 21044540 (+) True XLOC_007249
TCONS_00014299 mRNA downstream 98791 21106444 ~ 21115194 (+) False XLOC_007250
TCONS_00014301 mRNA downstream 98920 21106573 ~ 21115194 (+) False XLOC_007250
TCONS_00014275 other upstream 2205814 18799434 ~ 18799558 (+) True XLOC_007232
TCONS_00014213 other upstream 6095702 14909553 ~ 14909670 (+) True XLOC_007192
TCONS_00014209 other upstream 6159213 14844916 ~ 14846159 (+) True XLOC_007189
TCONS_00014206 other upstream 6168102 14837073 ~ 14837270 (+) True XLOC_007188
TCONS_00014169 other upstream 8802179 12189837 ~ 12203193 (+) True XLOC_007167
TCONS_00014313 other downstream 231029 21238682 ~ 21245773 (+) False XLOC_007253
TCONS_00014315 other downstream 663454 21671107 ~ 21678917 (+) False XLOC_007255
TCONS_00014324 other downstream 731963 21739616 ~ 21745484 (+) True XLOC_007257
TCONS_00014351 other downstream 1308581 22316234 ~ 22319001 (+) False XLOC_007271
TCONS_00014367 other downstream 2068474 23076127 ~ 23155656 (+) False XLOC_007280

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000361_00703411_00706245.mRNA True 2663 mRNA 0.48 8 CI01000361 702240 ~ 706252 (-)