RNA id: TU95738


Basic Information

Item Value
RNA id TU95738
length 3966
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G84167
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 9885667 ~ 9889683 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAGGCGTGTCAGTTTCCACAAAAGAATATATATATATAGTTGTAAGCACAACCAAGTGAGGTGGGCGGGGCTTTGGAGGCACATACCACGCCCCTCCCCACCATTGAACACACAAATCAAAGAGTGACTTCGAAACACTCAGGAAAAGAAACGCAACCTCAGAGAAAACTTTCCGGCACACTGAGCACCAACACCAGTAAATACGTTCAGTAGCACAGACACATGGTAGCCCTATGAGACAGCACAGCAGCTGAGAGCAGCATTCAGAAAACATACAATAAATACACACAACCGATTCCTCTTTACATGAGGGGGGCATGTCTATACACGTCTAACATTTCATGCGAGGGTCGAAATGTCAAAGAGCATTGCGGGAGCACCGTGCAAACCTGAACACACTTAAATTGTCTGTCCCCTCTTATGTAAAGTGGAATGTTTTTTTTATTTTTTTATTATTAAAACAGATTTTCAAACTTTTTTGGATTCATGATTTGGACTTTGGAGTGTCTGGTTTTCACTACTTATCAATGGATCCATATAACAATCTTTTCTTTTTTTGGGTAATATTAAAAATGAAAAAATTCAGTTTCTTGTACTCCACCATGATGGAGAACATATGAAAACACTTTTTTTATGCAGCAAGCCAATAAAATCCCCAGGTGAATGCTACTTTTAAGTAATTCGCTCTTCTTGACTAACAGTGTAGGCACTGCCAGATTTCGAGTTTTTAGTTTTAGCATAATCATGTCATTAACCTGTTTCATGTTTTGCGGATGTTCTTTGTCGGACATGGCATGGGATCAATTTGCGTTCAAACGGTGAAACGGCCTCTGCGGGGTTTGTGTATATTTCACTGGCGTTTTAAACACTGTATAGTTTGTAAAGAGGGGAGTTAGTTCAGCTCTCTTGGATCAAAATCACATCTCACGTCGTCGTTTAGTGAGGTATTTAAATGTTACATCCCACAGCCTCCACCCCAGGCCTGAGATGAGAAATCCAGACCCCGAAAGCCTCCGATGGGTCCAAAATGTCTGTAATGATTCATAAATGCACTGCATATTTAGGTCTGTAACTCAATGCTACATCAGTGAAGATAGAAAGAAAAATTCATCTCATTCCAAAGGAAAAAGTCTGACGTGGACTCACAGGTGCGAGCGATATTTTACGGACATCCAGTAAACTAAACACACAAATTATTTTAGAGCTATCTCGTGCGTTTTATTATATTTCATTCTCATTTGGCAATCACCACGACATTAAACCTTCCACCTTTAAATTCAGTTGTACGTAATAGTATCACTGTAATTACGTCACTTTAACAGCCTCCTCATCATAAAGGCTATAACAAAGAAATAAAAAAATCTATAAAGCTCCATACAGTCTAATAAAGCCATCATAATTTTTTTTTTTTTTTTTTTTTTTTTAAAATAGACAAAGCTTTTAAGCCGTCAAATGTTAAAACACCTCTGAAACGAAGAGAGAAGCGTGTTATTTTATTCCTGGATACTTGGCCTTTGGATCAGGATGGATAAATATTTAATTTTTCATAGCTCTAGGCATTGCCATTGGTATTTGTTCTTCTTCCAGAACATTCAAAAGAACGGTTCCCTTATAGGCAATATTTTTGATTGATATCACCTAATCTCATACACAGACTTTCTATAATAAAACTAATAAATAAATAAAATAAACATACATTCAACCATCTTAAATGCACATTTCTCCAGGGTTTAACATTTTTTATAACCTGTCATGTGCTGTGTTTTCGCATAGTGGTTCAACATGTGGATGTAATATCTGACACGCTTGTGATATCATGTCTGTCATGCTGGAACAAAATCTGACAGATTAAGTATCTGGATGACATACAGTAAAACACGCAATCGTTTGATAGCAGGGGCCCAGAAGACAGGACGGGGAAGGGTACGAAGCACATTCAACATGCTCTGGACCCTTGGACGCGAGCGTGTGACTTCTGACACAACAAAAAAAGGCTTCGGTACACTAATTGGAGCCTGTTCAGTCTTTAGAGCAGTCTGCATTTCGCATCAGATGATGCACTGGTCAAGTGTGGTTTGATCGCGCAATGAATTTTTCCGTAACGAATCATGACATTCAACATGGCACTTTTTTCCAACGATTATATCAGATGCTTAGAGTTATGTCAGTCTTTGATGATAAAGTTATCTGGTGATCTCAGAGAAGTTTAAAATTAGCAACAAAAGAACTCTAAGACCTAGCAGAAATAACACACTGAAAATCATACTGGGTGAATCTCACAAAAATTGCAAAGAAATGTCCAGGTCATATTTCAACCCGTAATCAAAAGAAATAAAAATATGAAATGATTTTCTGTATAAATTTATAACCTATAAGATTTTTTTGTGACTTTATTTTCATGACAATGAAATCTCGCTACTTATTCTCATTAAAGACAAATTAAAAGAACCGTTTTCTATTTGAATACATTTTAAAATGTAATTTATTCCAGTCATTGCAAAGCTGAATTTTCAGCAACATTACTCCAGTCTTCAGTGTCATATGATCCAGAAATCATTCTATAATGCTGATTTGGTCCTAAAGAAACATTTCGTATTATCATTATCAATGTTGAAAACAGTTGTGCTGTTCAACATATTTTTGATGAAATAAATGCAGCCTTGGTGAGCATAAGAGACTTCTTTCAAAAACATTAAAAAATTGGGTAACACTTTGGTATGGGGAACACATATTCACTATTAACTACAACTTTTACCTCAATAAACTCTTAATTTACTGCCTATTAATAGTTAGTAAGGTAGTTGTAGCGTTTAGGTTTAGGTATGGGGTAGGATTTAGGGATGTAGAATATGGTCATGCAGAATAAGGCATTTTATAAGTACTAATAAACAACCAATATGCAAGCTAATAAGCAACTGGTTAAAAATGAGAATTGTTCCCCATACCAAAGTGTTACCAAAAATGGTAAATGTTTCAAAACTTTTGACAGGTACTGTATAAGAAAGTAAAAAAGGGTCAGTAAGAAAACTTTAATTCAGCAAATGCTCACCAAAAAATAAATGTTGTTCTTTTAAACGTTCCATTCATCAAAGAATCCTGAAAAAATGCATCATGGTTAAAAAATGTTACTTGAGCACCAAATCATCATATTAGAATGTTTTCTGAAGGATCATGCGACACTGAAGACTGGAGTACTGATGCTGAAAATAAATCACATTTGAAAATATACTGTATCATTTGGGGGTGAAATGTGACCTACAAATTTCTTCATGAGATTTCCCCTACTGCACATACCAAAGAAATCAATGAACATAAAACAAGAAAAACAGCCCTCTATGGGCCTAAAGGGCTTGGGTGTGACATCACTGAACTACTACTGGTGCAAAGCTCACTTCGAGCTGTATTCATAATGAGCTCCAGAGCTGAACAGTCTTTCCTGTACCGTTAAACCCTGCTTCAGATCCAGGCTGGTGCTGGGAGCCGTCTCTGACCACATTATATTAGCCTGTTTGTGGCACTAAACATTTTGCATGAATCTTTTTTTGTGATCATAATGCGGTTTTGTTCTGAGGTCAAAAAATAAATAAATAAAATAAAAAATAAGAGCATATATCTGTCTCTCGTGTCTGACTGTGTTGCTGTGTTTCTGGTCGGTCTGAGAGGACAGAATTTGGCAGTGAGTTGATGAGCCGTGTCAAAGTTCTGTATCTGCGTTAGTCAAATTGTTTTGGGTTGACTAACGGACAATCTTAGATTGTATAATCGAAGTGTGGTTATGTTGTGGTCATGTGGTCTGAATATTAAGCAGTTCAGTCAGTAGTTATTTTTTCTAGTCTGTAGATTCACTCTGGTCAGGACAAATATGTTCTGGTTCCGGTAAGCAGCCAGAGTAGAAGGAGCTGAAGAGCCAACATCGGCCAGAGAGACGGACTCAAACTGCAGCCACCACCACAGTCAGTCGCGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95734 lncRNA upstream 21079 9864388 ~ 9864588 (+) True G84163
TU95733 lncRNA upstream 21503 9863845 ~ 9864164 (+) True G84162
TU95689 lncRNA upstream 56864 9824851 ~ 9828803 (+) True G84118
TU95691 lncRNA upstream 63653 9821780 ~ 9822014 (+) True G84120
TU95712 lncRNA upstream 72101 9813128 ~ 9813566 (+) True G84141
TU95743 lncRNA downstream 11425 9901108 ~ 9903922 (+) False G84171
TU95745 lncRNA downstream 11425 9901108 ~ 9901904 (+) True G84171
TU95753 lncRNA downstream 27122 9916805 ~ 9917663 (+) True G84179
TU95754 lncRNA downstream 28414 9918097 ~ 9918334 (+) True G84180
TU95755 lncRNA downstream 30341 9920024 ~ 9920246 (+) True G84181
CI01000013_09681047_09683275.mRNA mRNA upstream 202234 9681047 ~ 9683433 (+) True CI01000013_09681047_09683275
CI01000013_09430170_09443518.mRNA mRNA upstream 441644 9430170 ~ 9444023 (+) True CI01000013_09430170_09443518
CI01000013_09279917_09290301.mRNA mRNA upstream 594907 9279917 ~ 9290760 (+) True CI01000013_09279917_09290301
CI01000013_09243644_09260619.mRNA mRNA upstream 625048 9243644 ~ 9260619 (+) True CI01000013_09243644_09260619
CI01000013_09178561_09180465.mRNA mRNA upstream 704510 9177107 ~ 9181157 (+) False CI01000013_09178561_09180465
CI01000013_10261599_10283287.mRNA mRNA downstream 370588 10260271 ~ 10283967 (+) True CI01000013_10261599_10283287
CI01000013_10335904_10336688.mRNA mRNA downstream 446221 10335904 ~ 10336896 (+) True CI01000013_10335904_10336688
CI01000013_10502138_10525511.mRNA mRNA downstream 611007 10500690 ~ 10525674 (+) True CI01000013_10502138_10525511
CI01000013_10586449_10594082.mRNA mRNA downstream 696135 10585818 ~ 10594442 (+) True CI01000013_10586449_10594082
CI01000013_10756927_10790192.mRNA mRNA downstream 867244 10756927 ~ 10790489 (+) False CI01000013_10756927_10790192
TU95556 other upstream 283432 9601611 ~ 9602235 (+) False G84005
TU95558 other upstream 283483 9601611 ~ 9602184 (+) False G84005
TU93966 other upstream 550719 9329329 ~ 9334948 (+) True G82581
TU93521 other upstream 1844324 8028338 ~ 8041343 (+) True G82168
TU93312 other upstream 2547428 7335945 ~ 7338239 (+) True G81994
TU95773 other downstream 140925 10030608 ~ 10036793 (+) False G84194
TU95794 other downstream 186771 10076454 ~ 10079336 (+) True G84215
TU95833 other downstream 325444 10215127 ~ 10215962 (+) True G84250
TU96004 other downstream 882603 10772286 ~ 10784757 (+) False CI01000013_10756927_10790192
TU96453 other downstream 2280306 12169989 ~ 12170818 (+) True G84768

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU189310 True 306 lncRNA 0.52 2 CI01000032 2661206 ~ 2663424 (-)
tiger barb (Puntius tetrazona) TU189310 True 3220 lncRNA 0.38 1 NC_056716.1 21638410 ~ 21641629 (+)