Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00014319 |
| length | 1247 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 6 |
| gene id | XLOC_007256 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007125.7 |
| NCBI id | CM002898.2 |
| chromosome length | 52660232 |
| location | 21685537 ~ 21693914 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006606 | protein import into nucleus | biological_process |
| GO:0006913 | nucleocytoplasmic transport | biological_process |
| GO:0000054 | ribosomal subunit export from nucleus | biological_process |
| GO:0046039 | GTP metabolic process | biological_process |
| GO:0000070 | mitotic sister chromatid segregation | biological_process |
| GO:0003407 | neural retina development | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0061015 | snRNA import into nucleus | biological_process |
| GO:0060041 | retina development in camera-type eye | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005635 | nuclear envelope | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005515 | protein binding | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0000287 | magnesium ion binding | molecular_function |
| id | description |
|---|---|
| ko03013 | Nucleocytoplasmic transport |
| ko03008 | Ribosome biogenesis in eukaryotes |
| ko05166 | Human T-cell leukemia virus 1 infection |
| ko03019 | Messenger RNA biogenesis |
| ko03009 | Ribosome biogenesis |
| ko03016 | Transfer RNA biogenesis |
| ko03036 | Chromosome and associated proteins |
| ko04147 | Exosome |
| ko04031 | GTP-binding proteins |
| id | description |
|---|---|
| ZDB-GENE-990415-88 | Predicted to enable GTP binding activity; GTPase activity; and magnesium ion binding activity. Acts upstream of or within neural retina development. Predicted to be located in cytosol and nuclear envelope. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including brain; digestive system; eye; pronephros; and splanchnocranium. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human RAN (RAN, member RAS oncogene family). |
| ensembl_id | ENSDART00000034438 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00015970 | lncRNA | upstream | 392709 | 21293114 ~ 21293498 (+) | True | XLOC_007254 |
| TCONS_00014311 | lncRNA | upstream | 456056 | 21225415 ~ 21230151 (+) | True | XLOC_007252 |
| TCONS_00014310 | lncRNA | upstream | 458067 | 21224720 ~ 21228140 (+) | False | XLOC_007252 |
| TCONS_00014300 | lncRNA | upstream | 574566 | 21106565 ~ 21111641 (+) | False | XLOC_007250 |
| TCONS_00014294 | lncRNA | upstream | 686218 | 20997729 ~ 20999989 (+) | True | XLOC_007245 |
| TCONS_00015971 | lncRNA | downstream | 83643 | 21777557 ~ 21777836 (+) | True | XLOC_007259 |
| TCONS_00014340 | lncRNA | downstream | 435182 | 22129096 ~ 22134637 (+) | False | XLOC_007268 |
| TCONS_00014343 | lncRNA | downstream | 439923 | 22133837 ~ 22134637 (+) | True | XLOC_007268 |
| TCONS_00016199 | lncRNA | downstream | 462753 | 22156667 ~ 22164645 (+) | True | XLOC_007269 |
| TCONS_00014348 | lncRNA | downstream | 575366 | 22269280 ~ 22272517 (+) | True | XLOC_007270 |
| TCONS_00014316 | mRNA | upstream | 7607 | 21671686 ~ 21678600 (+) | True | XLOC_007255 |
| TCONS_00014312 | mRNA | upstream | 443972 | 21238682 ~ 21242235 (+) | False | XLOC_007253 |
| TCONS_00014314 | mRNA | upstream | 445343 | 21238778 ~ 21240864 (+) | True | XLOC_007253 |
| TCONS_00014309 | mRNA | upstream | 456039 | 21222287 ~ 21230168 (+) | False | XLOC_007252 |
| TCONS_00014308 | mRNA | upstream | 487347 | 21159693 ~ 21198860 (+) | True | XLOC_007251 |
| TCONS_00014321 | mRNA | downstream | 5215 | 21699129 ~ 21746346 (+) | False | XLOC_007257 |
| TCONS_00014322 | mRNA | downstream | 5500 | 21699414 ~ 21751346 (+) | False | XLOC_007257 |
| TCONS_00014323 | mRNA | downstream | 28321 | 21722235 ~ 21743115 (+) | False | XLOC_007257 |
| TCONS_00014325 | mRNA | downstream | 60607 | 21754521 ~ 21782227 (+) | False | XLOC_007258 |
| TCONS_00014326 | mRNA | downstream | 61555 | 21755469 ~ 21779098 (+) | True | XLOC_007258 |
| TCONS_00014315 | other | upstream | 7290 | 21671107 ~ 21678917 (+) | False | XLOC_007255 |
| TCONS_00014313 | other | upstream | 440434 | 21238682 ~ 21245773 (+) | False | XLOC_007253 |
| TCONS_00014275 | other | upstream | 2886649 | 18799434 ~ 18799558 (+) | True | XLOC_007232 |
| TCONS_00014213 | other | upstream | 6776537 | 14909553 ~ 14909670 (+) | True | XLOC_007192 |
| TCONS_00014209 | other | upstream | 6840048 | 14844916 ~ 14846159 (+) | True | XLOC_007189 |
| TCONS_00014324 | other | downstream | 45702 | 21739616 ~ 21745484 (+) | True | XLOC_007257 |
| TCONS_00014351 | other | downstream | 622320 | 22316234 ~ 22319001 (+) | False | XLOC_007271 |
| TCONS_00014367 | other | downstream | 1382213 | 23076127 ~ 23155656 (+) | False | XLOC_007280 |
| TCONS_00014372 | other | downstream | 1493198 | 23187112 ~ 23372472 (+) | True | XLOC_007280 |
| TCONS_00014405 | other | downstream | 2663486 | 24357400 ~ 24357517 (+) | True | XLOC_007298 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000110_03605251_03608582.mRNA | True | 1089 | mRNA | 0.45 | 6 | CI01000110 | 3604934 ~ 3608706 (-) |
| rainbow trout (Oncorhynchus mykiss) | TU123748 | True | 922 | TUCP | 0.42 | 5 | NC_048566.1 | 6196932 ~ 6199341 (+) |
| bowfin (Amia calva) | TU123748 | True | 1882 | lncRNA | 0.48 | 4 | CM030132.1 | 14441491 ~ 14444142 (+) |
