Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00014324 |
| length | 227 |
| RNA type | processed_transcript |
| GC content | 0.50 |
| exon number | 3 |
| gene id | XLOC_007257 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007125.7 |
| NCBI id | CM002898.2 |
| chromosome length | 52660232 |
| location | 21699129 ~ 21751346 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0006887 | exocytosis | biological_process |
| GO:0016081 | synaptic vesicle docking | biological_process |
| GO:0006906 | vesicle fusion | biological_process |
| GO:0048278 | vesicle docking | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0031629 | synaptic vesicle fusion to presynaptic active zone membrane | biological_process |
| GO:0098967 | exocytic insertion of neurotransmitter receptor to postsynaptic membrane | biological_process |
| GO:0042734 | presynaptic membrane | cellular_component |
| GO:0048787 | presynaptic active zone membrane | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0012505 | endomembrane system | cellular_component |
| GO:0008021 | synaptic vesicle | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0031201 | SNARE complex | cellular_component |
| GO:0098794 | postsynapse | cellular_component |
| GO:0005484 | SNAP receptor activity | molecular_function |
| GO:0000149 | SNARE binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-1489 | Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in exocytosis; intracellular protein transport; and vesicle docking. Predicted to act upstream of or within synaptic vesicle docking. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in postsynapse; presynaptic active zone membrane; and synaptic vesicle. Predicted to be integral component of membrane. Is expressed in anterior axial hypoblast; hatching gland; notochord; polster; and retina. Orthologous to human STX3 (syntaxin 3). |
| ensembl_id | ENSDART00000161435 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00014320 | lncRNA | upstream | 46225 | 21686224 ~ 21693391 (+) | True | XLOC_007256 |
| TCONS_00015970 | lncRNA | upstream | 446118 | 21293114 ~ 21293498 (+) | True | XLOC_007254 |
| TCONS_00014311 | lncRNA | upstream | 509465 | 21225415 ~ 21230151 (+) | True | XLOC_007252 |
| TCONS_00014310 | lncRNA | upstream | 511476 | 21224720 ~ 21228140 (+) | False | XLOC_007252 |
| TCONS_00014300 | lncRNA | upstream | 627975 | 21106565 ~ 21111641 (+) | False | XLOC_007250 |
| TCONS_00015971 | lncRNA | downstream | 32073 | 21777557 ~ 21777836 (+) | True | XLOC_007259 |
| TCONS_00014340 | lncRNA | downstream | 383612 | 22129096 ~ 22134637 (+) | False | XLOC_007268 |
| TCONS_00014343 | lncRNA | downstream | 388353 | 22133837 ~ 22134637 (+) | True | XLOC_007268 |
| TCONS_00016199 | lncRNA | downstream | 411183 | 22156667 ~ 22164645 (+) | True | XLOC_007269 |
| TCONS_00014348 | lncRNA | downstream | 523796 | 22269280 ~ 22272517 (+) | True | XLOC_007270 |
| TCONS_00014317 | mRNA | upstream | 45702 | 21685537 ~ 21693914 (+) | False | XLOC_007256 |
| TCONS_00014319 | mRNA | upstream | 45702 | 21686207 ~ 21693914 (+) | False | XLOC_007256 |
| TCONS_00014318 | mRNA | upstream | 46109 | 21685632 ~ 21693507 (+) | False | XLOC_007256 |
| TCONS_00014316 | mRNA | upstream | 61016 | 21671686 ~ 21678600 (+) | True | XLOC_007255 |
| TCONS_00014312 | mRNA | upstream | 497381 | 21238682 ~ 21242235 (+) | False | XLOC_007253 |
| TCONS_00014325 | mRNA | downstream | 9037 | 21754521 ~ 21782227 (+) | False | XLOC_007258 |
| TCONS_00014326 | mRNA | downstream | 9985 | 21755469 ~ 21779098 (+) | True | XLOC_007258 |
| TCONS_00014327 | mRNA | downstream | 37745 | 21783229 ~ 21816706 (+) | False | XLOC_007260 |
| TCONS_00014328 | mRNA | downstream | 37916 | 21783400 ~ 21816302 (+) | True | XLOC_007260 |
| TCONS_00014329 | mRNA | downstream | 74550 | 21820034 ~ 21846181 (+) | False | XLOC_007261 |
| TCONS_00014315 | other | upstream | 60699 | 21671107 ~ 21678917 (+) | False | XLOC_007255 |
| TCONS_00014313 | other | upstream | 493843 | 21238682 ~ 21245773 (+) | False | XLOC_007253 |
| TCONS_00014275 | other | upstream | 2940058 | 18799434 ~ 18799558 (+) | True | XLOC_007232 |
| TCONS_00014213 | other | upstream | 6829946 | 14909553 ~ 14909670 (+) | True | XLOC_007192 |
| TCONS_00014209 | other | upstream | 6893457 | 14844916 ~ 14846159 (+) | True | XLOC_007189 |
| TCONS_00014351 | other | downstream | 570750 | 22316234 ~ 22319001 (+) | False | XLOC_007271 |
| TCONS_00014367 | other | downstream | 1330643 | 23076127 ~ 23155656 (+) | False | XLOC_007280 |
| TCONS_00014372 | other | downstream | 1441628 | 23187112 ~ 23372472 (+) | True | XLOC_007280 |
| TCONS_00014405 | other | downstream | 2611916 | 24357400 ~ 24357517 (+) | True | XLOC_007298 |
| TCONS_00014442 | other | downstream | 5051420 | 26796904 ~ 26830566 (+) | False | XLOC_007327 |
