RNA id: TCONS_00014328


Basic Information

Item Value
RNA id TCONS_00014328
length 1875
RNA type mRNA
GC content 0.52
exon number 16
gene id XLOC_007260
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 21783229 ~ 21816706 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTGAAGAGGCGTTTCCTTTACATTATCTGGTCTGGAACAATCAATATCTGGAACTGGACCGAGAGCTTCAGAAAAAGCAGCATGACCTGGAGCGGCTGGATCCGCGCGGCCGCTCGGCGCTCGAGCTGTCAGTGTGTCTCGGGCACCTGGAGTCCACGCGCGTCCTGCTCAGACACAACGCAGATcccacacacaacaacacacaggGCTGGACAGTTTTGCAGGAGGCCGTGAGCACTGGAGACCCTGAACTGGTGCAGCTGGTCCTTCAGTACAGAGACTTCAGAAGAGCCACAGAGAGACTGGCTGGTATTcctgagctactgagcaaactgagaCAGGCACGTGACTTCTATGTGGAGATGAAATGGGAATTCACTAGCTGGGTTCCTCTAGTGTCGAAAGTTTGTCCAAGCGATGTTTACCGTGTCTGGAAAAGTGGTTCATGTTTGAGGGTCGACACCACTTTACTGGGCTTTGAGCACATGACTTGGCTAAAGGGCAGGCGTAGCTACATCTTTAAAGGTGGAGGTGATGGAGCAATGGTGATGGAGGTTGACCACGAGAAGCAGGTGGTTTATACAGAGCCGCTGTCTCTTTCTCCACGTGACGCCCCATCTCTGCTCGCCGCCATGTTGCCCTCGCAAGAAAACACGGCACAGAGACTGACCTCTCCGATAGTGTCCACTCATCTGAACACACGCAACATCGCCTTCGAGAGAAATAAGTCTGGGATTTGGGGATGGCGCTCGGAGAAGACAGAGGTTGTCAGCGGATATGAAGCAAAGGTTTACAGTGCCAGTAATGTGGAGTTAGTGACTCGTTCTAGGACTGAACACCTTTCTGATCAGGACAAGTCTAGAAGTAAAGgATCTAGAACTCCTTTACAGTCGTTTCTGGGTATTGCTGAGCAGCACATCTCCAGTACTGGGaGTCAGGTTTCTCAGTGCGCGAGTCCTCATAATCCAACAGCGATCACAGCAGAGGAGTACTTTGATGCAGAGTTTAACCTGAATGGCAGAGATATTGGCCGGCCCATTGAACTGACCAGCAAAGTGCAGAAGTTTAAGGCCACTTTATGGTTAAGTGAAGCTCATCCTCTCTCTCTGGCGGAGCAGGTGACGCCCATCATTGACCTCATGGCCATTTCTAATGCCCACTTCGCCAAACTGAGAGACTTCATCACTCTCCGTCTGCCACCTGGCTTTCCTGTGAAGATAGaaATCCCTCTCTTCCACGTGTTGAACGCTCGAGTGACATTCAGCAATCTTTGTGGCTGCGATGAACCTGTCAGTTCTGTTACTGTGCAATCTCCACAAGGAGCAACAGAGGCTGGTGAGACTCCTCCACCACTGCAGTGTGAAGTGGACCCATCGGTGTTTGAGCCTCCTCCAGAATACACTACACTTGGACCGGGCCGCAGTGAGCCAATGAGAGACGAGGATGATAATTTACTCCAGTTTGCCATTCAACAGAGCCTGCTGGATGCCGGAACAGAGAGTGACCAgGTGACTATATGGGAGGCTCTCACTAACACTCGCCCAGTTTCTCAGCCTCCGCTTTACGAGGAAGACTCTCAGCTGGAGAGGGCGATTCAGGAGTCTCTGTCGTTGGCTGGAGGGGAGAGTGGAGAGTCAGACTCGGGCCCACCATTATCCCCATCTGATCCCGCTCTCAGTTCACCTCCATGTTACAGCTCTCTGACGGAGCCTCGGGCGCCCGGAGCGTTTGCTGTGGCCAGCAGTTTTGACGAACAGCTACGCCTCGCTATGGAGCTTTCATGCAGAGAACAAGAGGAGATAGACAGGAAGAGAAGGGAAGAAGAGGAAGAGCTGGAGAGAATTTTACAGCTGTCTCTAACAGAGAAGTAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-101007-3 Predicted to be located in late endosome and plasma membrane. Predicted to be active in cytoplasm. Orthologous to human ANKRD13D (ankyrin repeat domain 13D).

Ensembl:

ensembl_id ENSDART00000164023

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00015971 lncRNA upstream 5564 21777557 ~ 21777836 (+) True XLOC_007259
TCONS_00014320 lncRNA upstream 90009 21686224 ~ 21693391 (+) True XLOC_007256
TCONS_00015970 lncRNA upstream 489902 21293114 ~ 21293498 (+) True XLOC_007254
TCONS_00014311 lncRNA upstream 553249 21225415 ~ 21230151 (+) True XLOC_007252
TCONS_00014310 lncRNA upstream 555260 21224720 ~ 21228140 (+) False XLOC_007252
TCONS_00014340 lncRNA downstream 312794 22129096 ~ 22134637 (+) False XLOC_007268
TCONS_00014343 lncRNA downstream 317535 22133837 ~ 22134637 (+) True XLOC_007268
TCONS_00016199 lncRNA downstream 340365 22156667 ~ 22164645 (+) True XLOC_007269
TCONS_00014348 lncRNA downstream 452978 22269280 ~ 22272517 (+) True XLOC_007270
TCONS_00014352 lncRNA downstream 502454 22318756 ~ 22324045 (+) False XLOC_007271
TCONS_00014325 mRNA upstream 1173 21754521 ~ 21782227 (+) False XLOC_007258
TCONS_00014326 mRNA upstream 4302 21755469 ~ 21779098 (+) True XLOC_007258
TCONS_00014322 mRNA upstream 32054 21699414 ~ 21751346 (+) False XLOC_007257
TCONS_00014321 mRNA upstream 37054 21699129 ~ 21746346 (+) False XLOC_007257
TCONS_00014323 mRNA upstream 40285 21722235 ~ 21743115 (+) False XLOC_007257
TCONS_00014329 mRNA downstream 3732 21820034 ~ 21846181 (+) False XLOC_007261
TCONS_00014330 mRNA downstream 12691 21828993 ~ 21838470 (+) True XLOC_007261
TCONS_00014331 mRNA downstream 44797 21861099 ~ 21901815 (+) True XLOC_007262
TCONS_00014332 mRNA downstream 89190 21905492 ~ 21923281 (+) True XLOC_007263
TCONS_00014333 mRNA downstream 118029 21934331 ~ 21944409 (+) True XLOC_007264
TCONS_00014324 other upstream 37916 21739616 ~ 21745484 (+) True XLOC_007257
TCONS_00014315 other upstream 104483 21671107 ~ 21678917 (+) False XLOC_007255
TCONS_00014313 other upstream 537627 21238682 ~ 21245773 (+) False XLOC_007253
TCONS_00014275 other upstream 2983842 18799434 ~ 18799558 (+) True XLOC_007232
TCONS_00014213 other upstream 6873730 14909553 ~ 14909670 (+) True XLOC_007192
TCONS_00014351 other downstream 499932 22316234 ~ 22319001 (+) False XLOC_007271
TCONS_00014367 other downstream 1259825 23076127 ~ 23155656 (+) False XLOC_007280
TCONS_00014372 other downstream 1370810 23187112 ~ 23372472 (+) True XLOC_007280
TCONS_00014405 other downstream 2541098 24357400 ~ 24357517 (+) True XLOC_007298
TCONS_00014442 other downstream 4980602 26796904 ~ 26830566 (+) False XLOC_007327

Expression Profile

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