RNA id: TCONS_00014343


Basic Information

Item Value
RNA id TCONS_00014343
length 704
lncRNA type retained_intron
GC content 0.45
exon number 2
gene id XLOC_007268
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 22129096 ~ 22140213 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATGATTGACCAGGTGACCGAAACGGGGGCTTTGCCCTTTACAGTCCAGCTCAAATCTCTTCTAGACCAAGAGTCCAGATATCAGCCCAAACTCTGTGGACTCCGCGTCATCGAGTCCGCTCAGGATAATGGTCTGCGAATGACCGTCAAGCTGAGAGACTATCAAGTGAGAGAGCTTCTCTCCTTGACTCGATTCTTTGGCTTCTGTGCGGAGACGTTTTCCTTTGCCGTGAATCTCCTAGATCGATTCCTGGCTGTGATGAAGATTCAGCCCAAGCATCTGTCTTGTGTGGGTCTGTGCTGCTTCTACATCGCTGTGAAGACTTCAGAAGAGGAGAAAAATGTCCCTCTGGCCAGTGACCTCATCAGGATCAGCCAGAATCGCTTCACTGTTCATGACATGATGAGGATGGAGAAGATCATTCTGGAAAAGCTCAACTGGAAGGTCAAGGCTCCGACTGCTCTTCACTTCCTCAGATTCTTTCACTCTCATATTCAAGAGAAAGTGGACACAGAAAGGTGAATGACTTGACCCCCATATATACATTGTTTGTTTTTgacacaattattttattaagacAAACTTTTTATTGAAGTGAAACTGCATGTATGATTTGGAACAGTTTGAACAGGTACTGTGTAGACCTGGTGTCCGTTCTTCCTACGTGGATTACTGAATTAGCTTTATTTGGATATTGACTAT

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0006403 RNA localization biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0050657 nucleic acid transport biological_process
GO:0050658 RNA transport biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051236 establishment of RNA localization biological_process
GO:0050684 regulation of mRNA processing biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0015931 nucleobase-containing compound transport biological_process
GO:0051028 mRNA transport biological_process
GO:0048024 regulation of mRNA splicing, via spliceosome biological_process
GO:1903311 regulation of mRNA metabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0071010 prespliceosome cellular_component
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0032156 septin cytoskeleton cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031105 septin complex cellular_component
GO:0120114 Sm-like protein family complex cellular_component
GO:0005940 septin ring cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016604 nuclear body cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0005686 U2 snRNP cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0071004 U2-type prespliceosome cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-020322-1 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in mitotic cell cycle phase transition and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within regulation of cell cycle. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; immature eye; male organism; musculature system; and nervous system. Orthologous to human CCNG1 (cyclin G1).

Ensembl:

ensembl_id ENSDART00000146257

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00015971 lncRNA upstream 356001 21777557 ~ 21777836 (+) True XLOC_007259
TCONS_00014320 lncRNA upstream 440446 21686224 ~ 21693391 (+) True XLOC_007256
TCONS_00015970 lncRNA upstream 840339 21293114 ~ 21293498 (+) True XLOC_007254
TCONS_00014311 lncRNA upstream 903686 21225415 ~ 21230151 (+) True XLOC_007252
TCONS_00014310 lncRNA upstream 905697 21224720 ~ 21228140 (+) False XLOC_007252
TCONS_00016199 lncRNA downstream 22030 22156667 ~ 22164645 (+) True XLOC_007269
TCONS_00014348 lncRNA downstream 134643 22269280 ~ 22272517 (+) True XLOC_007270
TCONS_00014352 lncRNA downstream 184119 22318756 ~ 22324045 (+) False XLOC_007271
TCONS_00016200 lncRNA downstream 230493 22365130 ~ 22367921 (+) True XLOC_007271
TCONS_00014361 lncRNA downstream 364269 22498906 ~ 22506744 (+) True XLOC_007276
TCONS_00014338 mRNA upstream 13446 22113331 ~ 22120391 (+) False XLOC_007267
TCONS_00014339 mRNA upstream 13446 22114918 ~ 22120391 (+) True XLOC_007267
TCONS_00014335 mRNA upstream 35826 22076596 ~ 22098011 (+) False XLOC_007266
TCONS_00014344 mRNA downstream 17423 22152060 ~ 22168570 (+) False XLOC_007269
TCONS_00014345 mRNA downstream 17423 22152060 ~ 22168786 (+) False XLOC_007269
TCONS_00014346 mRNA downstream 37410 22172047 ~ 22273847 (+) False XLOC_007270
TCONS_00014347 mRNA downstream 37528 22172165 ~ 22269032 (+) False XLOC_007270
TCONS_00014349 mRNA downstream 159150 22293787 ~ 22367920 (+) False XLOC_007271
TCONS_00014324 other upstream 388353 21739616 ~ 21745484 (+) True XLOC_007257
TCONS_00014315 other upstream 454920 21671107 ~ 21678917 (+) False XLOC_007255
TCONS_00014313 other upstream 888064 21238682 ~ 21245773 (+) False XLOC_007253
TCONS_00014275 other upstream 3334279 18799434 ~ 18799558 (+) True XLOC_007232
TCONS_00014213 other upstream 7224167 14909553 ~ 14909670 (+) True XLOC_007192
TCONS_00014351 other downstream 181597 22316234 ~ 22319001 (+) False XLOC_007271
TCONS_00014367 other downstream 941490 23076127 ~ 23155656 (+) False XLOC_007280
TCONS_00014372 other downstream 1052475 23187112 ~ 23372472 (+) True XLOC_007280
TCONS_00014405 other downstream 2222763 24357400 ~ 24357517 (+) True XLOC_007298
TCONS_00014442 other downstream 4662267 26796904 ~ 26830566 (+) False XLOC_007327

Expression Profile

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