RNA id: TCONS_00014344


Basic Information

Item Value
RNA id TCONS_00014344
length 2658
RNA type mRNA
GC content 0.44
exon number 10
gene id XLOC_007269
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 22152060 ~ 22168786 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAGTGTATCGGAGAGCGCTGTAAAGAAATATCAAACGGAATATACACCAAATAGCTAACTGTGGTGGAAAGCGTTTCTTGTCACTGTAGAAACACCGACTGCTGTTTTTGGTTTGAAAtgactttactttttatttatttaaatctaatttaCTGTCAGAGAAGATCAATCTTCAGACTGGAGAAATGTTTAGGTTACGTTGGTGATGTGTTAAGTGAAGCTGCAGAACTTTCAAGAAGTAACAACTCGTTTATGTTCAGTTTGCTAGTTGAGCTACTTTTTAACCTGTTGCTAAAAAAGCTAGTGGATTTCACTAATCTCTTAATTTGATAATCCTCAAGCATTCACTTCACAGCATGTAGGCCTACTGACAGTCATACATAGTGTAGCCTACAGTGCTTCATTCCATCTGTAGTGCTTTATACAGTACATTATGACTTCTAACTATTGAcagcttcatttatttatttaattttggccACAGAAATGGCTCTACTTTTGGCCTTTTTATGTCTTACAAGCGTTACAAATGTAATAGGAAAGCAAAAGATAAATTCAGAAAATATAACAAGGATTCTAGACGGACTTCTTGAGGGCTATGACAATCGACTACGGCCAGGATCTGGAGTCTCTGTGACTGAGGTCAAAACAGACATATTTGTTACAAGTTTTGGACCAGTATCAGATGTTAATATGgagTTCACCATGGATATGTTTTTCCGCCAAATGTGGGTTGATGAGAGGTTAGCCTTTCAGGGGCCCATTGAAATCTTGCCTTTGAATAACCGTATGGTGGACAAAATCTGGACACCTGACACATTTTTCCGCAACGCACGGAAGTCACTGGCACACAACATGACGTCCCCAAACAAGCTGTTCCGAATCATGCAAAATGGCACAGTCTTTTATACCATGAGGTTGACTGTAAGTGCAGTATGTCCAATGGTGCTGAGGGACTTTCCTATGGATGGACACACATGTCCTCTCTACTTTGGAAGCTATGCTTACACGAATCGTGAAATTGTCTACACATGGAGAAAAGGACTAGAGGCATCTGTAGATTTTCCTCCAGAATCATCAAGTCTTCTTCAGTATGATCTCCTGGGCCAGACCTTGTTCACCGAAACATATAAGTTCAGCACAGGACTGTATTCTGTCCAGGTCGTCCATTTCTATCTTCAGAGGAAGCTTGGATATCATCTTATCCAAACGTATATCCCTTTGATTATGGTGGTGGTTCTGTCACAAGTCTCATTCTGGATCAACAAGGAATCTGTTCCGGCTCGAACGGTAGCTGGAATCACCACTGTGCTCACCATGACCACTCTAAGCATCAGCGCCCGCTCTTCCCTGCCCAAAGTCTCCTACGCCACCGCCATGGACTGGTTCATCGCTGTCTGCTTTGCCTTCGTGGCTTCGGCTCTAGTTGAGTTTGCTGCTGTCAACTACTATGCCACACTTGAGGCCAACAGGGAGAATCACAAGCTCCCCAGAGGCTCCATTGTGGAGTCTCAAGCCCAGGGCAGCGACGATGAGCCCGAGTCGCCTCAGTCTGACACCAGTGCCTATAGCCGTAAAAGAAGGGGTTACCCTGTGTCTGAAGCGCCCAGGACTCGCGTACCCATCTTTCTTCAGGGCTCAGCCTTCCCACCCAATATGATGCTGGCAGGCACCAGCGCCATAGACAAGTACTCCCGCATCCTTTTTCCTCTGGCCTTTGGGATCTTCAACCTCGTCTACTGGTACATCTATCTCAGCAAAGACACTCTGGAAAAGCTCAGGGATATCGAGTGAGTTTCTCCTGAGCAGCACAAGGCATATTCAGCAGTAAGACTTACAGGAAGTGCTTTACTCTggacctctctttctctgtctctcactTTCGTCATCTTTCGTCAACTTCACCCTTGATCGAGCACAAGCCCGCCTGACACTGTTTGACAAGCATTTGATCCCGTTCCTTTCCTATTTTATCACCTATATACTTTCCACTCCATTTGCCTTTATATTCACAGATGTAGCCGAGGGCCACGTCGTTATACTAACCCTGCTACATTACAAACCTTCCTCTGGTTCTGCTCTAGTTCtgttcgtgtatgtgtgtgtatgtgtaacaCACTAAGGAGTTGATGACATAATCTGCAGCTCTAACTGGTGATGCAACATTAAACCAATGCTTTCAGTGGCCTGCCCTCTACAGAGACACGGCTCGCACTGCACTAGATCAAAAGCAGCGGGTTTATACTGACAGCTTCAACGATTTCGCATTGAAAATAAAGGAGAAAAAGTGCATCCCCAGAACTGAACTTTTACTAACACCATTCACACACCACACGGATGTATTGAGAGTACGGTGCTTCTGTTGGTGCGGTCACGCTGAAATAGAGGGATAAAGTAAAGCTCGGTGTGGGGGGTGCGTGTTTAATATGTATTCTCTGCTCGCGGTTTATTTGATGTTCTCTGATGTTTCTCCGCCGTCTCtgttgggagaacatgcacatGCACAGGATGTACTCGTCAATTCAAACAAATCGTAAGACTATTATGTTCAACATCATAAATGGCTTTGAAAACCCATTTTGAAGAGACAATGTTGCACTGAAGAGTAAACATGCAGGTGCTAATGTAAACCTcaggaaataaatacattaatttgc

Function

GO:

id name namespace
GO:0060078 regulation of postsynaptic membrane potential biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0007214 gamma-aminobutyric acid signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0051932 synaptic transmission, GABAergic biological_process
GO:0007165 signal transduction biological_process
GO:0032590 dendrite membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1902711 GABA-A receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0098794 postsynapse cellular_component
GO:0022851 GABA-gated chloride ion channel activity molecular_function
GO:0008503 benzodiazepine receptor activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004890 GABA-A receptor activity molecular_function
GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005237 inhibitory extracellular ligand-gated ion channel activity molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1692 Predicted to enable GABA-gated chloride ion channel activity; inhibitory extracellular ligand-gated ion channel activity; and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to contribute to GABA-A receptor activity; benzodiazepine receptor activity; and chloride channel activity. Predicted to be involved in several processes, including GABAergic synaptic transmission; chloride transmembrane transport; and gamma-aminobutyric acid signaling pathway. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in dendrite membrane and postsynapse. Predicted to be integral component of plasma membrane. Is expressed in eye; retina; and retinal photoreceptor layer. Orthologous to human GABRA6 (gamma-aminobutyric acid type A receptor subunit alpha6).

Ensembl:

ensembl_id ENSDART00000082697

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00014340 lncRNA upstream 17423 22129096 ~ 22134637 (+) False XLOC_007268
TCONS_00014343 lncRNA upstream 17423 22133837 ~ 22134637 (+) True XLOC_007268
TCONS_00015971 lncRNA upstream 374224 21777557 ~ 21777836 (+) True XLOC_007259
TCONS_00014320 lncRNA upstream 458669 21686224 ~ 21693391 (+) True XLOC_007256
TCONS_00015970 lncRNA upstream 858562 21293114 ~ 21293498 (+) True XLOC_007254
TCONS_00014348 lncRNA downstream 100710 22269280 ~ 22272517 (+) True XLOC_007270
TCONS_00014352 lncRNA downstream 150186 22318756 ~ 22324045 (+) False XLOC_007271
TCONS_00016200 lncRNA downstream 196560 22365130 ~ 22367921 (+) True XLOC_007271
TCONS_00014361 lncRNA downstream 330336 22498906 ~ 22506744 (+) True XLOC_007276
TCONS_00014364 lncRNA downstream 638928 22807498 ~ 22808106 (+) False XLOC_007278
TCONS_00014341 mRNA upstream 11847 22132388 ~ 22140213 (+) False XLOC_007268
TCONS_00014342 mRNA upstream 17642 22132896 ~ 22134418 (+) False XLOC_007268
TCONS_00014338 mRNA upstream 31669 22113331 ~ 22120391 (+) False XLOC_007267
TCONS_00014339 mRNA upstream 31669 22114918 ~ 22120391 (+) True XLOC_007267
TCONS_00014335 mRNA upstream 54049 22076596 ~ 22098011 (+) False XLOC_007266
TCONS_00014346 mRNA downstream 3477 22172047 ~ 22273847 (+) False XLOC_007270
TCONS_00014347 mRNA downstream 3595 22172165 ~ 22269032 (+) False XLOC_007270
TCONS_00014349 mRNA downstream 125217 22293787 ~ 22367920 (+) False XLOC_007271
TCONS_00014350 mRNA downstream 128687 22297257 ~ 22361604 (+) False XLOC_007271
TCONS_00014354 mRNA downstream 228681 22397251 ~ 22443502 (+) False XLOC_007272
TCONS_00014324 other upstream 406576 21739616 ~ 21745484 (+) True XLOC_007257
TCONS_00014315 other upstream 473143 21671107 ~ 21678917 (+) False XLOC_007255
TCONS_00014313 other upstream 906287 21238682 ~ 21245773 (+) False XLOC_007253
TCONS_00014275 other upstream 3352502 18799434 ~ 18799558 (+) True XLOC_007232
TCONS_00014213 other upstream 7242390 14909553 ~ 14909670 (+) True XLOC_007192
TCONS_00014351 other downstream 147664 22316234 ~ 22319001 (+) False XLOC_007271
TCONS_00014367 other downstream 907557 23076127 ~ 23155656 (+) False XLOC_007280
TCONS_00014372 other downstream 1018542 23187112 ~ 23372472 (+) True XLOC_007280
TCONS_00014405 other downstream 2188830 24357400 ~ 24357517 (+) True XLOC_007298
TCONS_00014442 other downstream 4628334 26796904 ~ 26830566 (+) False XLOC_007327

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_18779242_18784513.mRNA False 1548 mRNA 0.46 7 CI01000000 18778960 ~ 18784513 (-)