RNA id: TCONS_00016199


Basic Information

Item Value
RNA id TCONS_00016199
length 743
lncRNA type sense_over
GC content 0.52
exon number 4
gene id XLOC_007269
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 22152060 ~ 22168786 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGACTAGAGGCATCTGTAGATTTTCCTCCAGAATCATCAAGTCTTCTTCAGTATGATCTCCTGGGCCAGACCTTGTTCACCGAAACATATAAGTTCAGCACAGGACTGTATTCTGTCCAGGTCGTCCATTTCTATCTTCAGAGGAAGCTTGGATATCATCTTATCCAAACGTATATCCCTTTGATTATGGTGGTGGTTCTGTCACAAGTCTCATTCTGGATCAACAAGGAATCTGTTCCGGCTCGAACGGTAGCTGGGAATCACCACTGTGCTCACCATGACCACTCTAAGCATCAGCGCCCGCTCTTCCCTGCCCAAAGTCTCCTACGCCACCGCCATGGACTGGTTCATCGCTGTCTGCTTTGCCTTCGTGGCTTCGGCTCTAGTTGAGTTTGCTGCTGTCAACTACTATGCCACACTTGAGGCCAACAGGGAGAATCACAAGCTCCCCAGAGGCTCCATTGTGGAGTCTCAAGCCCAGGGCAGCGACGATGAGCCCGAGTCGCCTCAGTCTGACACCAGTGCCTATAGCCGTAAAAGAAGGGGTTACCCTGTGTCTGAAGCGCCCAGGACTCGCGTACCCATCTTTCTTCAGGGCTCAGCCTTCCCACCCAATATGATGCTGGCAGGCACCAGCGCCATAGACAAGTACTCCCGCATCCTTTTTCCTCTGGCCTTTGGGATCTTCAACCTCGTCTACTGGTACATCTATCTCAGCAAAGACACTCTGGAAAAGCTCAGG

Function

GO:

id name namespace
GO:0060078 regulation of postsynaptic membrane potential biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0007214 gamma-aminobutyric acid signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0051932 synaptic transmission, GABAergic biological_process
GO:0007165 signal transduction biological_process
GO:0032590 dendrite membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1902711 GABA-A receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0098794 postsynapse cellular_component
GO:0022851 GABA-gated chloride ion channel activity molecular_function
GO:0008503 benzodiazepine receptor activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004890 GABA-A receptor activity molecular_function
GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005237 inhibitory extracellular ligand-gated ion channel activity molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00014340 lncRNA upstream 22030 22129096 ~ 22134637 (+) False XLOC_007268
TCONS_00014343 lncRNA upstream 22030 22133837 ~ 22134637 (+) True XLOC_007268
TCONS_00015971 lncRNA upstream 378831 21777557 ~ 21777836 (+) True XLOC_007259
TCONS_00014320 lncRNA upstream 463276 21686224 ~ 21693391 (+) True XLOC_007256
TCONS_00015970 lncRNA upstream 863169 21293114 ~ 21293498 (+) True XLOC_007254
TCONS_00014348 lncRNA downstream 104635 22269280 ~ 22272517 (+) True XLOC_007270
TCONS_00014352 lncRNA downstream 154111 22318756 ~ 22324045 (+) False XLOC_007271
TCONS_00016200 lncRNA downstream 200485 22365130 ~ 22367921 (+) True XLOC_007271
TCONS_00014361 lncRNA downstream 334261 22498906 ~ 22506744 (+) True XLOC_007276
TCONS_00014364 lncRNA downstream 642853 22807498 ~ 22808106 (+) False XLOC_007278
TCONS_00014341 mRNA upstream 16454 22132388 ~ 22140213 (+) False XLOC_007268
TCONS_00014342 mRNA upstream 22249 22132896 ~ 22134418 (+) False XLOC_007268
TCONS_00014338 mRNA upstream 36276 22113331 ~ 22120391 (+) False XLOC_007267
TCONS_00014339 mRNA upstream 36276 22114918 ~ 22120391 (+) True XLOC_007267
TCONS_00014335 mRNA upstream 58656 22076596 ~ 22098011 (+) False XLOC_007266
TCONS_00014346 mRNA downstream 7402 22172047 ~ 22273847 (+) False XLOC_007270
TCONS_00014347 mRNA downstream 7520 22172165 ~ 22269032 (+) False XLOC_007270
TCONS_00014349 mRNA downstream 129142 22293787 ~ 22367920 (+) False XLOC_007271
TCONS_00014350 mRNA downstream 132612 22297257 ~ 22361604 (+) False XLOC_007271
TCONS_00014354 mRNA downstream 232606 22397251 ~ 22443502 (+) False XLOC_007272
TCONS_00014324 other upstream 411183 21739616 ~ 21745484 (+) True XLOC_007257
TCONS_00014315 other upstream 477750 21671107 ~ 21678917 (+) False XLOC_007255
TCONS_00014313 other upstream 910894 21238682 ~ 21245773 (+) False XLOC_007253
TCONS_00014275 other upstream 3357109 18799434 ~ 18799558 (+) True XLOC_007232
TCONS_00014213 other upstream 7246997 14909553 ~ 14909670 (+) True XLOC_007192
TCONS_00014351 other downstream 151589 22316234 ~ 22319001 (+) False XLOC_007271
TCONS_00014367 other downstream 911482 23076127 ~ 23155656 (+) False XLOC_007280
TCONS_00014372 other downstream 1022467 23187112 ~ 23372472 (+) True XLOC_007280
TCONS_00014405 other downstream 2192755 24357400 ~ 24357517 (+) True XLOC_007298
TCONS_00014442 other downstream 4632259 26796904 ~ 26830566 (+) False XLOC_007327

Expression Profile

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