RNA id: TCONS_00014347


Basic Information

Item Value
RNA id TCONS_00014347
length 907
RNA type mRNA
GC content 0.52
exon number 6
gene id XLOC_007270
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 22172047 ~ 22273847 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGAGTATCGGAAAAACCCCACATATCTTCTTGTTATGTCCGCTCATCGTGGCCGTGGCGTGCGCGCAAAGGACTACACCCTGACTATGTATTTCCAGCAAGCCTGGCGAGACAAGCGATTGTCTTACTCGGAGATTCCTCTCAATCTAACCTTGGATAACCGCGTGGCTGACCAGCTGTGGGTGCCCGACACCTATTTCCTCAACGACAAGAAGTCCTTCGTTCACGGAGTGACGGTCAAGAACCGAATGATACGCCTTCACCCTGACGGCACCGTTCTATACGGATTAAGGATCACCACCACCGCTGCCTGTATGATGGACCTGAGGCGATACCCGCTGGACGAGCAGAACTGCACACTGGAGATCGAGAGCTATGGATACACCACAGATGACATCGAGTTTTATTGGCGAGGGGGAGATGGAGCGGTTTCGGGGGTGGAGAGAATCGAACTGCCCCAGTTCTCCATCGTAGACTATAAACTCATCTCCAAGAACGTGGTCTTCTCCACAGGTTCGTATCCACGTCTGTCTCTGAGTTTCAAACTTAAGAGGAACATTGGTTACTTCATCCTGCAGACCTACATGCCCTCAATCCTGATCACCATCCTGTCCTGGGTATCCTTCTGGATCAACTACGACGCTTCAGCTGCCCGTGTGGCTTTAGGTATCACCACCGTGCTGACCATGACCACCATTAATACTCACTTGAGAGAGACCCTCCCCAAGATTCCCTATGTGAAAGCCATAGACATGTACCTGATGGGCTGCTTTGTCTTTGTGTTCCTGGCGCTGCTGGAGTACGCCTTCGTCAATTATATCTTCTTCGGGAGAGGCCCTCAGCGGCAGAAGAAGGCGGCGGAAAAAGCCGCCACGGCCAACAATGAGAAACTCAGGCCCGACCCCA

Function

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0070208 protein heterotrimerization biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1902711 GABA-A receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022851 GABA-gated chloride ion channel activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004890 GABA-A receptor activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8196 Contributes to GABA-gated chloride ion channel activity. Acts upstream of or within protein heterotrimerization. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in autistic disorder and developmental and epileptic encephalopathy 92. Orthologous to human GABRB2 (gamma-aminobutyric acid type A receptor subunit beta2).

Ensembl:

ensembl_id ENSDART00000148259

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016199 lncRNA upstream 7520 22156667 ~ 22164645 (+) True XLOC_007269
TCONS_00014340 lncRNA upstream 37528 22129096 ~ 22134637 (+) False XLOC_007268
TCONS_00014343 lncRNA upstream 37528 22133837 ~ 22134637 (+) True XLOC_007268
TCONS_00015971 lncRNA upstream 394329 21777557 ~ 21777836 (+) True XLOC_007259
TCONS_00014320 lncRNA upstream 478774 21686224 ~ 21693391 (+) True XLOC_007256
TCONS_00014348 lncRNA downstream 248 22269280 ~ 22272517 (+) True XLOC_007270
TCONS_00014352 lncRNA downstream 49724 22318756 ~ 22324045 (+) False XLOC_007271
TCONS_00016200 lncRNA downstream 96098 22365130 ~ 22367921 (+) True XLOC_007271
TCONS_00014361 lncRNA downstream 229874 22498906 ~ 22506744 (+) True XLOC_007276
TCONS_00014364 lncRNA downstream 538466 22807498 ~ 22808106 (+) False XLOC_007278
TCONS_00014345 mRNA upstream 3379 22152060 ~ 22168786 (+) False XLOC_007269
TCONS_00014344 mRNA upstream 3595 22152060 ~ 22168570 (+) False XLOC_007269
TCONS_00014341 mRNA upstream 31952 22132388 ~ 22140213 (+) False XLOC_007268
TCONS_00014342 mRNA upstream 37747 22132896 ~ 22134418 (+) False XLOC_007268
TCONS_00014339 mRNA upstream 51774 22114918 ~ 22120391 (+) True XLOC_007267
TCONS_00014349 mRNA downstream 24755 22293787 ~ 22367920 (+) False XLOC_007271
TCONS_00014350 mRNA downstream 28225 22297257 ~ 22361604 (+) False XLOC_007271
TCONS_00014354 mRNA downstream 128219 22397251 ~ 22443502 (+) False XLOC_007272
TCONS_00014353 mRNA downstream 128219 22397251 ~ 22443502 (+) False XLOC_007272
TCONS_00014355 mRNA downstream 128353 22397385 ~ 22442059 (+) True XLOC_007272
TCONS_00014324 other upstream 426681 21739616 ~ 21745484 (+) True XLOC_007257
TCONS_00014315 other upstream 493248 21671107 ~ 21678917 (+) False XLOC_007255
TCONS_00014313 other upstream 926392 21238682 ~ 21245773 (+) False XLOC_007253
TCONS_00014275 other upstream 3372607 18799434 ~ 18799558 (+) True XLOC_007232
TCONS_00014213 other upstream 7262495 14909553 ~ 14909670 (+) True XLOC_007192
TCONS_00014351 other downstream 47202 22316234 ~ 22319001 (+) False XLOC_007271
TCONS_00014367 other downstream 807095 23076127 ~ 23155656 (+) False XLOC_007280
TCONS_00014372 other downstream 918080 23187112 ~ 23372472 (+) True XLOC_007280
TCONS_00014405 other downstream 2088368 24357400 ~ 24357517 (+) True XLOC_007298
TCONS_00014442 other downstream 4527872 26796904 ~ 26830566 (+) False XLOC_007327

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00014314 True 1188 mRNA 0.47 6 CM030128.1 8795228 ~ 8824532 (+)