RNA id: TCONS_00016200


Basic Information

Item Value
RNA id TCONS_00016200
length 2792
lncRNA type read_through
GC content 0.37
exon number 1
gene id XLOC_007271
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 22293787 ~ 22367921 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttttcctgctgcatCCGACCAACCGTTATGAGCATTTTCTCAGAGCATGCGTATGATTTCTCCACGGCACGTATGTAATCTGGTCGGTGGATGCAGCTGAGCCTTTCCCCTTCTGCCAAACCTACTTCCTGTTGTCATGTGGAGCACATTTATATGCACTTGCGCTTTGAGCTGCTCATGTAATAATTGAGGTTTGCAGATGTTACATAATATCTCGGTTCATATATTCAGAGCTCGTTGTGGATGCTGACAAAACGGCAAGCTGCACACGGAGATAAAGGAGGCTGGATCTCCTTCTTCTCCATGTAATTATTAATTCCTAATAAAATGTATTGGCTTGTGTGCGTATGCGTGTAATGCACTAAGGCAGATCACACACAATCCTGCGCCGCTGTTTGAATATTTGATATCTCTTCTGACGTCTGTCTGACGTTCTTGACTCATGATGACCTCACGCTCAGACAGATCATCGCACAGCGAGCCTGATTTTTTCCCCTCCTCATCCTTCCAGCATGTGTGTAACATACACCACAGTCGAGGCTTAGGATGGAAAAAAGGGTCGTTTTGCAGAACCCAAGGCGGTTTTATGTAATGACGTGTTTCTATCAGGCCGCTACTGCTATCTAGTGGCGGCCTGGCGGACTGTAAACACCACCGTCCATTTAGAGAGAGGAAAGACACAAGATGGTTGATGTCTGACTGTCAAGAAGACAGATAATTTATTGAAGCCGGTCGTTTTGTGAAAGGTTACTTAAATGGCAGGTATAGTGCCTTGGGTGAAGAAGCTTTGATTAAATttcaataaaattgtaaataagaatgtatttttgtatatttttgtattttaataatgcaggTTTGGGATACTGTTTGAATGAATAAGggcaaaataacattttattttaggtgaaacaaacaaatgtcgcatttatttacataaacagtttttaaaaaaattatatttaattaaaacatgcaGGCCTGTAGTGAATGTAAGGGTGTATATGGataatattttggtaacacttaacaataaggttgttttagttcattttaattgCTAACATGCACTATTGATGAACAATACATTAACTatggtatttgttcatgtttgttaacattagtcaataaaaaatacagttgttcatccccagcaggcacacaacatcataagacattaatattaggttcgatttaggtcatgacgtcaggtgaccaaaattcaatgtctagccagcgtctaagcaAGGACGTTATTGTGACACCCAATAATGACGttaaattacgttgatatttggttaattttaggttgtgttggaaagtgaccaaattacagttttccgggataaataacaaaatgggagggtggcagGTGATGGGTCTGAAATGtgagagatgggtctgaaatacaggagacttccttgaaaaacgggagtgttggcaggtatacactatgcactctgactactccaatattgttgataagccgtggtagccatttcactctgtctcacgCTAAACGATGTCAACccatcgcaacagactgtcatcgtccaatcagcacagattagcattgcgctaaggaggggtttaggaacaaatgaatcactgaacaaatcatttgggagtcattgggatattaggtaaaaataaatgcatattataagacagtgAAAGgggtttttgaccttgcatgcatatcagactgttgttgaagtcccccaaaaccaaaatataacaCTTTTTAGTCTATAAAAAAATTGGGGCGGTCACTGGATCgagcccggctgggtcagttgccatttctatgtggagtttgcatgttgacCCTCCAGGAGCTCTGGGGtgtccaccacaagtccaaagacttgcccTATAGGTGAGGTAAGCCAAATCATCCatagtgtatgcatgtatgtactgATCCTCCAGGTTGGGCGTTGAGTGTTGAGCTAacgacccaccttgtaaaaattagatgttacgaaacaccaacatgataagggctaaatatcaacttcgatttaaaacagccctgggagtaagtaaataagtagtaAATACATCTACTAATGAAgccttgttgtaaagtgtgacctatttttttttaaagactccCAGTGGCACAAAAAtcaaaaatgcaaattgatttTATGTCAAAAACCCTACATCTATATGACATCAACATTTTGAAGCCTCGTTAACAactaaaataacaacacaaaacataCTACATtataagaaaagttttattttcttaaagcttCCAAATTtgtacactggattttgtatgCCTACAATGACTGTAAACTTCCTTATCAAACATATTTGACCCCAATAATAGATGTCAATTTaacgtcattttgacatcaaggtctTCAGTCGATGTCAAGTTAATTTAGCATTTTTGacattgttttgacatcaaggtgcccgcTTGGCAATTAAAGACATAgctcattcaaaaataaaaaattaacgcCCATTCACTCTCCCTCATGTCATTTTACCCATTaaccaacattcctcaaaatatcttatttcaacaaaagaaatccaaataggttttgaaaaagagtgagtaaattatttcattttggttgaactatcaaTTTAAAGcataaagaagaaaagaaagtgGCATTGAAAGTATGGGTTTCTATATTTATCTGTAAACACACATTTGCACTTTGATTTATGTTTATAATatgaacaaaacagaaaaacagcTTTTGAATGATGCTATGTAATTCTGCAAtgaattcaaaataaaagcatgatcAGCAATGTT

Function

GO:

id name namespace
GO:0015914 phospholipid transport biological_process
GO:0045332 phospholipid translocation biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00014352 lncRNA upstream 41085 22318756 ~ 22324045 (+) False XLOC_007271
TCONS_00014348 lncRNA upstream 92613 22269280 ~ 22272517 (+) True XLOC_007270
TCONS_00016199 lncRNA upstream 200485 22156667 ~ 22164645 (+) True XLOC_007269
TCONS_00014340 lncRNA upstream 230493 22129096 ~ 22134637 (+) False XLOC_007268
TCONS_00014343 lncRNA upstream 230493 22133837 ~ 22134637 (+) True XLOC_007268
TCONS_00014361 lncRNA downstream 130985 22498906 ~ 22506744 (+) True XLOC_007276
TCONS_00014364 lncRNA downstream 439577 22807498 ~ 22808106 (+) False XLOC_007278
TCONS_00014365 lncRNA downstream 440052 22807973 ~ 22811997 (+) True XLOC_007278
TCONS_00016201 lncRNA downstream 473236 22841157 ~ 22866534 (+) False XLOC_007279
TCONS_00016203 lncRNA downstream 473236 22841157 ~ 22959212 (+) False XLOC_007279
TCONS_00014350 mRNA upstream 3526 22297257 ~ 22361604 (+) False XLOC_007271
TCONS_00014346 mRNA upstream 91283 22172047 ~ 22273847 (+) False XLOC_007270
TCONS_00014347 mRNA upstream 96098 22172165 ~ 22269032 (+) False XLOC_007270
TCONS_00014345 mRNA upstream 196344 22152060 ~ 22168786 (+) False XLOC_007269
TCONS_00014344 mRNA upstream 196560 22152060 ~ 22168570 (+) False XLOC_007269
TCONS_00014354 mRNA downstream 29330 22397251 ~ 22443502 (+) False XLOC_007272
TCONS_00014353 mRNA downstream 29330 22397251 ~ 22443502 (+) False XLOC_007272
TCONS_00014355 mRNA downstream 29464 22397385 ~ 22442059 (+) True XLOC_007272
TCONS_00014356 mRNA downstream 79741 22447662 ~ 22454885 (+) True XLOC_007273
TCONS_00014357 mRNA downstream 89309 22457230 ~ 22464183 (+) True XLOC_007274
TCONS_00014351 other upstream 46129 22316234 ~ 22319001 (+) False XLOC_007271
TCONS_00014324 other upstream 619646 21739616 ~ 21745484 (+) True XLOC_007257
TCONS_00014315 other upstream 686213 21671107 ~ 21678917 (+) False XLOC_007255
TCONS_00014313 other upstream 1119357 21238682 ~ 21245773 (+) False XLOC_007253
TCONS_00014275 other upstream 3565572 18799434 ~ 18799558 (+) True XLOC_007232
TCONS_00014367 other downstream 708206 23076127 ~ 23155656 (+) False XLOC_007280
TCONS_00014372 other downstream 819191 23187112 ~ 23372472 (+) True XLOC_007280
TCONS_00014405 other downstream 1989479 24357400 ~ 24357517 (+) True XLOC_007298
TCONS_00014442 other downstream 4428983 26796904 ~ 26830566 (+) False XLOC_007327
TCONS_00014490 other downstream 8045856 30413777 ~ 30424854 (+) False XLOC_007352

Expression Profile

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