RNA id: TCONS_00014354


Basic Information

Item Value
RNA id TCONS_00014354
length 9097
RNA type mRNA
GC content 0.43
exon number 22
gene id XLOC_007272
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 22397251 ~ 22443502 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAATACGCATTACTGAAGCTCTTGAATCTGCCACGACGACATTCGAGACTGCGCATTTGGCAGCGGTTGATGATGTGCTCGAACACACTAGGAACGTTGCGGAGCGTGCGCCCGAGCTACATCGAGATAGCAAACATTCCGCATGGATTTAACACTCTTCAGCGTGACTTCTGTAAGCACACACTCTCCTGCTGTCTCCACACACTACACACGGCTGGGTTTTGTCCGATGGGGGCAACCAACCCCATAGGTTTTAAGGAAGCGAGGACTTACTGGCTGCTGGAGACTAACAAAGTGTTTGTTAGCCAGCTAACGTTAAGTTAACTGCTGTCATTGTGAAAGTGACAGTAAAACTTACCAAACTTAACTAGTGACAACAGCGTCCTATGAGGATTAAACTTGTTGGTCCTGTGACTCAGCATCAGCTCTTCGCACGAAAGACGAAGAATGGCGCTGAGCACTAACCTGTGTCGTGTGACCCTGGGGGTTGAGGGCATGACCTGTGGCTCCTGTGTACAGTCCATTGAAGGCCGGATCGGAGGCCTGCCAGGAGTCATTCATATACAGGTGTCTCTGGAGCAGAACAATGCAACAGTGACATATGACCACACTCAACACACTCCACAATCCATAGCAGATGCCATTGAGGATATGGGCTTTGAGTCCAGCCTGACAAACGCTACATCAACACCAGTTCAAACAGAAACCAAAGTCTTCAGCAAAGCAGGCTGTAGCGCAGACTCTGTCCAACAAGCTCTGAGCACACTGGCCCAGATAAAAGGGGTGATTGAGACTCAGGAGAGTGCTGATAACCAAGGCCTTGCTGTTACGTTTGTCCCATCTCTGGTCAGTGAGGATCAGCTTGGGGAAGTGTTGAAGTGCCTGGCTCCCGACACAGCCTGTCGGCCACCGCTCAGCCCAAAGGAAGGCTCGACTTCTCGCAGCTTCAGTGGAGTTGAGGCAGTGAAAATGCGGATTGAAGGAATGGTGTGTCTGTCCTGCACTACAACCATCGAGGGCAAGATTGGGAAGCTAAAAGGGGTTGAAAAGATTAAAGTCTCTCTAGAATCTCAGGAGGCCGCTGTAGTTTACCTGCCTTATATCATCACAGTGGATGAGATTGTGAAGCAGATTGAGGTGGCTGGTTTCAAGGCCACTGTCAAGTCTAAACCTCGTCAGTTGAAGCTGTCAGCTAGTGAAGTAGAGCGATTACTCAGTGCGCCAAAACAGACTGAGGAGAAGCTTTCTGAGCCGCCTGCAGATTCCACAGTCACTACACTGTTTCAGGTTACAGGAATGCACTGCAACTCCTGTGTGGTAAACATTCAGGACAATATATCCAAGCTGCCTGCTGTGACTTCAGTAGTTGTGTCCTTGGAGAATAGACAGGCGTCCATTCAGCACAACCCAAAACAAGTCTCAGCGGTGGAGCTGCAGAAAGCCATCGAGGCTCTTCCTCCAGGGAATTTTAAAGCCATCATTCCAGCTTCCCCAGAGCCAGGCTTCCTCCAGCCACTGGTATCAGTAGCTGAGATCCACATTGAGGGCATGACCTGCGGCTCCTGTGTTCAGTCCATCGAGGGCACGCTTTCCCAGAAGAAAGGAGTCAGATCAGCCCAAGTGTCATTGGCCAATCATAAGGGAACCTTTGAATATGACCCTTTATTGACTTCACCTGAGGAGCTGAGGGCTGCTATAGAGGACATGGGCTTTGATGCTTTTCTGCCTGAGACAAATTCATTGGTGCCTTCAGTGGTCAAAAGCCCATCTCTGTCTGTCCGGAGCTCATCATTATCTCCTGTCCGGTCAGCTGTGAAGGAGAATGAAGCTGAGAGTGACGCTGAGCCTTCAACAAACACTATTTCTAAATGTTTCATCCAGATTGGAGGAATGACCTGTGCCTCCTGCGTGGCCAACATTGAGAGGAACCTCAAGAACGAATATGGTATACACTCCGTTTTGGTGGCTCTGATGGCCAGTAAAGCTGAGGTTCGATACAGCCCATCAGTCATTGATCCTCTGAGAATAGCAGAGCTGATTCGAGAGCTTGGCTTCACTGCCACAGTCATGGATAATTATGATGGCTCAGATGGATCCCTGGAGCTTGTGGTCAGAGGGATGACATGTGCCTCTTGTGTTCATAAAATTGAGTCTAACTTGATGAAACAGAAGGGCATCCTCTACGCTTCAGTTGCCCTTTCAACTAATAAAGCCCACATCAAATATGACCCAGAAGTGACCGGCCCCAGAGATATAATCAGATTGATTGAGAACATGGGATTTACTGCCTCTCTAGTGAAGAAAGATCGTCCAGGAAGTCATTTGGATCACAGTCGTGAAATCCGACAGTGGAAAAGATCATTCCAGATCAGTCTGTTTTTCTGTGTGCCGGTTATGGGCATGATGATCTACATGATAGTTGTGGATCACATGATCGACAAGTATCATCAACATCATAACGCCACCGCTGAGGACAGAGCGAAATATCACTCCACAATGTTTCTGGAGAAACAGCTTCTGCCAGGCCTCTCCATCATGAACCTCATCTCGTTTCTCTTCTGTGTTCCTGTGCAGTTTATCGGCGGGAGGTATTTTTACTGTCAAGCCTACAAAGCTGTCAAGCACCGGACGGCCAATATGGATGTTCTGATTGTTCTTGCTACAACAATTGCCTTCACGTATTCAGTGGTGGTTCTTCTGGTTGCCATGGTCGAGAGGGCAAAGGTCAACCCCATCACCTTCTTTGATACTCCGCCAATGCTGTTTGTGTTCATCTCGCTGGGCCGCTGGCTGGAGCAGATAGCAAAGAGTAAGACCTCCGAGGCACTGTCCAAGCTGATGTCTTTACAGGCCACAGAGGCCACTGTAGTTACACTCAATGAGGACATGTCTGTGTTAAGTGAAGAGCAGGTGGATGTGGAGCTGGTGCAGAGGGGAGATGTAGTGAAAGTTGTGCCTGGAGGGAAGTTTCCAGTGGACGGCCGGGTGATTGAAGGGCACTCCATGGCAGACGAGTCTCTCATTACGGGTGAAGCCATGCCCGTTACCAAGAAGCCGGGGAGCACTGTTATTGCGGGCTCGATCAATCAGAACGGCTCTCTGCTGATCAAAGCCACTCATGTGGGCACAGACACCACCCTCTCTCAGATCGTCAAACTGGTGGAGGAGGCACAGACTTCAAAGGGTTATGATAAGAGTATCTCTGAAGCGGAGGCTGTCATCCGCTTCGCCTTCCAGGCCTCCATCACTGTCCTGTGCATTGCTTGCCCCTGCTCTCTGGGTCTCGCAACCCCCACAGCAGTAATGGTGGGCACAGGGGTCGGAGCCCAGAATGGAATCCTCATCAAGGGAGGAGAGCCATTAGAGATGGCACACAAGATTCAGTCTGTGGTATTTGACAAAACAGGCACAATCACATATGGAGCTCCCAAAGTGGTCCAGGTGAAGATGCTGGCAGAAGGGAATCGGTTGCCACGCTCTAAACTGCTGGCGATTGTCGGCACTGCTGAGAATAGCAGTGAACATCCTCTGGGTGCTGCTATCACCAAATATTGCAAACAGGAGTTGGGGACAGAGTCTCTTGGCACTTGCACAGATTTTCAAGCTGTGCCAGGTTGTGGGATCAGGTGTTTGGTCAGTAACACAGAAAACCTGCTGAAGAGGGAGGACAGCGACAGTGAGGAGAACCAGCACAATGCTGTGTTGATCCAGATCAGTGATGCCAGAGCACACAGCACTGAACACCCACTCATCATGGACCCGCAGCCACTCACTGTAGTTCAGACGGCCTCATACACAGTGCTGATAGGGAACAGAGAGTGGATGAGGAGGAATGCGCTGCAGGTGCGAGCAGATGTAGATGAAGCCATGACAGAGCATGAGAGGAGAGGGTGCACCGCTGTGCTGGTGGCTGTGGACAATGAGCTTTGTGCAATGGTGGCGATAGCAGACACAGTGAAGCCTGAGGCAGAGCTTGCGGTTCACGTTCTGTCTGCGATGGGGCTGGAGGTTGTGCTGATGACTGGAGACAACAGCAAAACAGCTCGAGCCATCGCTGCTCAAGTGGGCATCAGGAAGGTGTTTGCTGAAGTCTTGCCGTCTCATAAAGTGGCAAAGGTGGAGCAGCTCCAGCAGGAAGGAAAGCGTGTGGCGATGGTGGGTGACGGGGTGAATGACTCTCCTGCTCTGGCCATGGCGGATGTGGGCATTGCAATTGGCACAGGCACAGATGTAGCTATCGAGGCTGCTGATGTGGTGCTTATCAGGaatgaTCTTCTTGATGTTGTTGGGAGCATTGACCTTTCAAAGAAGACCGTCAAAAGAATCAGAATCAACTTTGTATTTGCACTAATGTACAATCTTGTAGGAATTCCCATTGCTGCAGGTGTGTTTATGCCTGTGGGGTTGGTTCTGCAGCCCTGGATGGGCTCTGCTGCTATGGCTCTATCTTCTGTGTCTGTAGTGCTGTCCTCCCTCCTGCTAAAATGTTACACTAAACCCACTGTTGAGAAGCTAAAAAGACGACTGGGAGATGTGAGAACTCACGGCAGCCTGTCCGACGTCAGTGTTCACATCGGCATGGGAGAACTGCGTCGCCCCTCACCCAAACTCAGCCTGCTGGATCGTTTTGTCAACTACAGCCGAGCCTCCATCAACTCATTGCGATCCGACAAACACTCCATGAACAGCATGGCCCTCAGCGAACCCGACAAACACTCTCTACTGGTGGGAGACGATCACTGCGACAACGAGATAGTCTGAGGGTCTCTGGAGCTTCGCTTTACCGCAGTGCCTGCAGTCCAGGAGGATCTAATGAGGGTCTTCCTGCTTCAGTGGCCCTTTGATTGTCCAGCCATTTACATACTTTCAGATGGCCTCCGTTTACATGGAAATGGATTGCATTTTACAGTAAGGTCTCATTTGTTGGCGTTAGTTATCGTGTACTCTACCACATGTCCTTCCAAAGGACTTTTATTTATCTTTGAAATACAAATGAAGAGATTTTTAATCAAATTGGAgagatttctttttttctattcctCTGTTGCAAATCCTAAATCAGAtgcttcaaaacacaaattaagatgtttaAGTCTTCTGAAGAGATATAATTGCGTTATTATTTGGACAGGTTTAATATCGGGAACATTGATCTGTGATCAAAAACCTGCTTGGCGTGAAAGAACTAACCTCATTAGTTTATTGTTGAAGCTTAGATGAGCCTCATTGGCTCTCATGCATCAAGCAAGCATCCTTGAACCTCTGTGACCAAAGTGCTGTTATTAaagtttatatttgtatattgtatCTGATCATGATATAGAGCGATCAAATCTCTTCAGAAGACTTTATTGATCGATACAGATTTATCTTTTGATTAATTTAGGAATGTTTTGAAGCATCAGAGTTTTGCGTTAAATAGAGAGACTGAACtcttttagattagattaaaaacatcttcatttgtgttttgaagacaAACATTTTCTTTCCGTTTTAGAATCAGACAAGTTTGAAATGATTGGGGgacaatttacaattttaaatctgccatcatttactcacctccacttgttccaaacctatatTCTTTCTTCGTTTGGACACAAAAGACGATCTTTTGAAAAACAATCTGGTTGCCGAGACCagctgacttccatagtagaggAAAAAATTGCTATCGAAGTTGATGGGTGCCAGcgaccagcattctttaaaatatcttaaactcaaacctttttttaaaccagggtggactatccctttaaggcagggatgtcaaacttaattcctggagggccgcagccctgcacagtttagttcttaccctagttaaacacacctgatcaaatcaattgagtcctttaggcttgtttaaaaccaacaggtaagtgtgttgaagcagggttggaactaaactgtgcagggctgcggccccccaggaattgagtttgacaccactGCTTTAAGGCATTAGTtgacattttacagtatttattaatttatttctttttgttattaaaaatattgggtAACACtgtagtttaggtcacaatttatgCTATTTACTACTAATTAATTACCtgactattattaagatattaactgttcatcaGTAGTTGTAAAGTATGAGCTTATTTAGCATACCTgttcctacccaaaacctaaacccaacttctaccttattaatcaatagtttattaagctatcagtgttagttaatggtttgttaatatcaTCAATTGTgacctaaaataaagtgttaccaaatattgttttattgcGAGTTACAGTGCATTATGGAACATATAAAGTTGGATTTTAACgttttattttaagataaattgtaaatattattcaattCTTATTACGTATTACTCATTTTTTTAGTACAAAGGGATGGTTTACCCTAACTTTAAATTAAATCACCATTTACTTATCCTTGTGTGGTTCCAAAACTTtcagttgttgttatttttattctgttgaacacaaaagaaaatatttagaagaatgctggaaatgGGTAGCTGtagacttccattgtagaaaaaGAATATAATCATTATATAACATTATTCAGAATATATTTTGCGTTCAAGAGAAGAACCTCAAGAAAGAAACAAACTTTTATAGgcgaactgtgcctttaagataGCCAAGTTAACAAATGTTGTTAATTTATAACAAATGAAACCTAATGGTAAAGTGCTGCCAATATTCTTGGTGGCTAATTTAAGATGACAATCCGTTTCAAGGAAAATCAACTACACCACAGATTCAGAAGGTgtcaaatctattttatttttgtgaaaacaaCCATTTAAGAgtgatttattgtgttttatgcgAATGATCAATATTTATTCtatcatttatttatagtatattaTGTACTTTTTGTGGGACATGAAGAAATgtgaagatttattttttaaaaattaacaaatgaactCTTTTCTAAGCTCGTTTTCTGAGACGTCGACCATTCCAAAGAAAGCAGCGTTTCTGTTGTCTCAGAGGGATCAGTGAGCTGCCGTTCCACATCAGGAGGAATGATGGGGCCACAGGTtagcaaacacagaaatgctacACTATTATATGTCCATtatgtgttcatttgtttattgttcAGCACACTATTAGCAACACTCGAGCTGCCTTTGCTATATTTCAATGTGCACTAGTGCTTGTCAACTTGGcttttaaatgtatctttttttttacgAGATTAACTTTATTTCAAAACCCAGTGCTTTTTACGAGCTGAGTTTGACTGACATTTTATCAGCAGCCGTTAGTGCATTAATGCCTTTCATACCTACATACATATTCAACACAACCTGAATCAGGTTACTGACGTACATTACTGACTTTTCAACTATCGTTTATCCAAAATGTAGAAAAGAATTATCCTGAGGATGTTTTGTTACCGTGTTATTGAAGGTCAAGTAAGCGATGCAGTCTTCATATAAAACAAGTGCTTTGATGATTAGCTGTTGCTTGTTTTGCCAAATGTGTTCAATGTTTCTATGTGAACATCCTGAAATTGTGATTTATGCACTTCATTGTTTCACTAATGTGGTTGGAGATCATTTTTGTGTAGTTTTGCATCATATTCTTTAAATAAACCCCCAGTTTTCAATAAGCCGACACTCACTAATTGCTTGCTTGCTTTGGTGTAACAGTGTTCATTTGCATACTTTTTCCTGcattactaaaaataatacagaaaGTGGTCACATTTATCAAGTTTGGTTGGATTAAAGTGAACCATGGTTCAATAGTGTGCAAGGGTGGAAGTAATATCCCTGACCAAATGAATTGAACTACAAGTGGGAACAACCTCAATTTGTGGTAACAGTGTGGTGATACATAAGCACAATTTACACTAGTACacagatacattcattcattcattttctttttggtttagtttctttattaatctggggtcgccacagtggaatgaactgccaacttatccagcatatgaagaaacccacgcgaatgtggaagaacatgcaaacttcacacagaaacgctaactgacccagccgaggctcgaactagctaccttcttgctgtgaggcaacagcactacctactgcgccaccacgtcgcctaCACAGATACATGGCAGAGTTAATGCAAATCCTTTAGCACCATGTCGTAACTTCTCTGTATTCATCCTTTAATCATACAGTAATTTTTACTGAGAACAATCAGTTAAATGGTCCACTGAAGCTGAAAGCATTGCAATAACGAAATGGCCACCTAAAGTCCTGTCCTAAACCTGAATGAAAATCTCTGGGAAGTTACGGCTGAGAAAAACCATTACAGATTTGTCAGATGAACATTACATTAATGCTAATGTTTATCAAATATGACTTGTTCTgattttgatctccactgtatatttgttttgtacttttattaTCACTTGCTGAATAATACTGCAGTGTGATTGCTCACTATCTTAACGATTGTTCTCATATAGGATTAAGTTCGTATTCTACTTCAGCAATTAAATAGAATTACATTTTCCAGATCAACATATTAGTCAGACCTTAAACAACAACATTCTGATTCAGACGCTGTTCAGGCAGTTGATAATTAACATTATTGTAAACCTATTTTTCAAGATGGaataaacaatgttaaacttgAAGATTTTAGGGTAAACATTGTCGTGGAAACATATTTTAACAGGCGGGTGTTGAGTAGCAGGTTTTCTCTATCgtatattaaaatattagaatTATTACCAGATttatggaggacgaaacctgcaaaaacaataaataaatacgcaaataaatgcatatataggCAGGGCGACgcagtgccgcagtaggtagtgctgtcgcctcatcgcaagaaggtcactggtttgagcctcggctgggtcagttggcgtttttgtgtgtaGTGTACATTTtctcccaaagacatgcggtacaggtgaattgggtacactaaattgtccgttgtgtgtgtgtgagtggatgtttcccagagatgggttgcggccggaagggcatccgctgcataaaaaacttgctggataagttggcggttcattccacagtggcg

Function

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0046688 response to copper ion biological_process
GO:0060003 copper ion export biological_process
GO:0006812 cation transport biological_process
GO:0010038 response to metal ion biological_process
GO:0006878 cellular copper ion homeostasis biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005507 copper ion binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0043682 copper transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-45 Predicted to enable P-type divalent copper transporter activity. Acts upstream of or within response to copper ion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in perinuclear region of cytoplasm and trans-Golgi network. Is expressed in digestive system; gill; locus coeruleus; neural tube; and notochord. Used to study Menkes disease. Human ortholog(s) of this gene implicated in Menkes disease; X-linked distal spinal muscular atrophy 3; cutis laxa; and occipital horn syndrome. Orthologous to human ATP7A (ATPase copper transporting alpha).

Ensembl:

ensembl_id ENSDART00000185239

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016200 lncRNA upstream 29330 22365130 ~ 22367921 (+) True XLOC_007271
TCONS_00014352 lncRNA upstream 73206 22318756 ~ 22324045 (+) False XLOC_007271
TCONS_00014348 lncRNA upstream 124734 22269280 ~ 22272517 (+) True XLOC_007270
TCONS_00016199 lncRNA upstream 232606 22156667 ~ 22164645 (+) True XLOC_007269
TCONS_00014340 lncRNA upstream 262614 22129096 ~ 22134637 (+) False XLOC_007268
TCONS_00014361 lncRNA downstream 55404 22498906 ~ 22506744 (+) True XLOC_007276
TCONS_00014364 lncRNA downstream 363996 22807498 ~ 22808106 (+) False XLOC_007278
TCONS_00014365 lncRNA downstream 364471 22807973 ~ 22811997 (+) True XLOC_007278
TCONS_00016201 lncRNA downstream 397655 22841157 ~ 22866534 (+) False XLOC_007279
TCONS_00016203 lncRNA downstream 397655 22841157 ~ 22959212 (+) False XLOC_007279
TCONS_00014349 mRNA upstream 29331 22293787 ~ 22367920 (+) False XLOC_007271
TCONS_00014350 mRNA upstream 35647 22297257 ~ 22361604 (+) False XLOC_007271
TCONS_00014346 mRNA upstream 123404 22172047 ~ 22273847 (+) False XLOC_007270
TCONS_00014347 mRNA upstream 128219 22172165 ~ 22269032 (+) False XLOC_007270
TCONS_00014345 mRNA upstream 228465 22152060 ~ 22168786 (+) False XLOC_007269
TCONS_00014356 mRNA downstream 4160 22447662 ~ 22454885 (+) True XLOC_007273
TCONS_00014357 mRNA downstream 13728 22457230 ~ 22464183 (+) True XLOC_007274
TCONS_00014358 mRNA downstream 24170 22467672 ~ 22478713 (+) False XLOC_007275
TCONS_00014359 mRNA downstream 24196 22467698 ~ 22479480 (+) True XLOC_007275
TCONS_00014360 mRNA downstream 55255 22498757 ~ 22523799 (+) False XLOC_007276
TCONS_00014351 other upstream 78250 22316234 ~ 22319001 (+) False XLOC_007271
TCONS_00014324 other upstream 651767 21739616 ~ 21745484 (+) True XLOC_007257
TCONS_00014315 other upstream 718334 21671107 ~ 21678917 (+) False XLOC_007255
TCONS_00014313 other upstream 1151478 21238682 ~ 21245773 (+) False XLOC_007253
TCONS_00014275 other upstream 3597693 18799434 ~ 18799558 (+) True XLOC_007232
TCONS_00014367 other downstream 632625 23076127 ~ 23155656 (+) False XLOC_007280
TCONS_00014372 other downstream 743610 23187112 ~ 23372472 (+) True XLOC_007280
TCONS_00014405 other downstream 1913898 24357400 ~ 24357517 (+) True XLOC_007298
TCONS_00014442 other downstream 4353402 26796904 ~ 26830566 (+) False XLOC_007327
TCONS_00014490 other downstream 7970275 30413777 ~ 30424854 (+) False XLOC_007352

Expression Profile

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