RNA id: TCONS_00014361


Basic Information

Item Value
RNA id TCONS_00014361
length 384
lncRNA type retained_intron
GC content 0.45
exon number 3
gene id XLOC_007276
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 22498757 ~ 22523799 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATATCCAACATGGCGGCCCCCGTAGATGACATGTTTTCTCGCTGCGTGGATTCTGCCAAAGCAAGTAATTGCGTGGATGTCCGATTTATCAATAATGTCAAGggcAAAGGATTATTCGCTAAAAAACCTTTCAAAAAAGGAGACACTATTTTTATTGAACGACCTCTAGTCTCCTCTCAGTTCTTGTGGAATGCCTTGTACAAATACAGAGCATGTGAATACTGTCTGCGTGCTCTGGAGACTGCAGAAGAGAATGCCAGAAGGTTGAGTGGTCTGCCAGCTCTCATCTTACCCCATCCTGAGTTATGTAAGGTGCGACCTGATAGACACCAGGCCTGTCCACAATGTCAGGTACGTTTGATTTAATATATTCCCAGGTTAGC

Function

GO:

id name namespace
GO:0060215 primitive hemopoiesis biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0045638 negative regulation of myeloid cell differentiation biological_process
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-040912-39 Acts upstream of or within definitive hemopoiesis; negative regulation of myeloid cell differentiation; and primitive hemopoiesis. Is expressed in several structures, including digestive system; eye; heart; integument; and pleuroperitoneal region. Orthologous to human SMYD5 (SMYD family member 5).

Ensembl:

ensembl_id ENSDART00000174265

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016200 lncRNA upstream 130985 22365130 ~ 22367921 (+) True XLOC_007271
TCONS_00014352 lncRNA upstream 174861 22318756 ~ 22324045 (+) False XLOC_007271
TCONS_00014348 lncRNA upstream 226389 22269280 ~ 22272517 (+) True XLOC_007270
TCONS_00016199 lncRNA upstream 334261 22156667 ~ 22164645 (+) True XLOC_007269
TCONS_00014340 lncRNA upstream 364269 22129096 ~ 22134637 (+) False XLOC_007268
TCONS_00014364 lncRNA downstream 300754 22807498 ~ 22808106 (+) False XLOC_007278
TCONS_00014365 lncRNA downstream 301229 22807973 ~ 22811997 (+) True XLOC_007278
TCONS_00016201 lncRNA downstream 334413 22841157 ~ 22866534 (+) False XLOC_007279
TCONS_00016203 lncRNA downstream 334413 22841157 ~ 22959212 (+) False XLOC_007279
TCONS_00016202 lncRNA downstream 334413 22841157 ~ 22959212 (+) False XLOC_007279
TCONS_00014359 mRNA upstream 19426 22467698 ~ 22479480 (+) True XLOC_007275
TCONS_00014358 mRNA upstream 20193 22467672 ~ 22478713 (+) False XLOC_007275
TCONS_00014357 mRNA upstream 34723 22457230 ~ 22464183 (+) True XLOC_007274
TCONS_00014356 mRNA upstream 44021 22447662 ~ 22454885 (+) True XLOC_007273
TCONS_00014354 mRNA upstream 55404 22397251 ~ 22443502 (+) False XLOC_007272
TCONS_00014362 mRNA downstream 84880 22591624 ~ 22708777 (+) False XLOC_007277
TCONS_00014363 mRNA downstream 173741 22680485 ~ 22696828 (+) True XLOC_007277
TCONS_00014369 mRNA downstream 569463 23076207 ~ 23479421 (+) False XLOC_007280
TCONS_00014370 mRNA downstream 651277 23158021 ~ 23479577 (+) False XLOC_007280
TCONS_00014371 mRNA downstream 677773 23184517 ~ 23479577 (+) False XLOC_007280
TCONS_00014351 other upstream 179905 22316234 ~ 22319001 (+) False XLOC_007271
TCONS_00014324 other upstream 753422 21739616 ~ 21745484 (+) True XLOC_007257
TCONS_00014315 other upstream 819989 21671107 ~ 21678917 (+) False XLOC_007255
TCONS_00014313 other upstream 1253133 21238682 ~ 21245773 (+) False XLOC_007253
TCONS_00014275 other upstream 3699348 18799434 ~ 18799558 (+) True XLOC_007232
TCONS_00014367 other downstream 569383 23076127 ~ 23155656 (+) False XLOC_007280
TCONS_00014372 other downstream 680368 23187112 ~ 23372472 (+) True XLOC_007280
TCONS_00014405 other downstream 1850656 24357400 ~ 24357517 (+) True XLOC_007298
TCONS_00014442 other downstream 4290160 26796904 ~ 26830566 (+) False XLOC_007327
TCONS_00014490 other downstream 7907033 30413777 ~ 30424854 (+) False XLOC_007352

Expression Profile

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