RNA id: TCONS_00016203


Basic Information

Item Value
RNA id TCONS_00016203
length 1533
lncRNA type inter_gene
GC content 0.42
exon number 6
gene id XLOC_007279
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 22841157 ~ 22959220 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGTTTTAGgctccccttgaaacatttctgttgtgtttcttgATATTTGCATGCACTGTGAAAATGCAACacatttttgtaaatgtgtttgtgttgtgaggatttggaACACTATGCTGTAAAACCAGTGAGGGTCTTTTCTTAaattgttggtgttttttgtaattactTGGGATTTCATGTTGGAGCCATTTATAGGTTGCAATTTTCTTTCGCACCACTAGAGGGTGTGTATGGTATTTATGCTCTCCTCACGACGATCTGAGGTGTAGAAGAAggcaaaacaaactttttgaccGGCATGGCTGTGAGAACGGGttaatgtttgttttgatgtttacttttaattttgAGAAAATGGACAATACATGGATTGGAATATTCAACTTTATTTGCAAAGTATGTGGAAGGAAACTGGAGTACTCGGAAAAAAACTCACGCGAGCAGAAGGAGAATATGTAAACTCCttatagaaacgccaactggcccagccaggactcgaaccagcgacattcttgttgtgaggccacattgctaaccactgagccaccgtgccaccttgtTCTGGATTAATCTCAGAAAGAGGGGGATGAGTAGGGATGGATGGGGGATTCTTTGAGGTGAAAATGACTAAGTTTCTGATAGGGTGTACTTTACTGGACTGTGTACATGATGTGAGCAGACTACAAAACAGCAGTGCTGACACAGAGCCTGAGCAGAGAAGATATTCATCCTGAGAGGAAGATCTTTCCAACAGCACTCTGCCACTGATGACCATCTCCTCCTGGGCCTCAGACACAacctgttttttcttcttacctgctttttggaactgtTCCTCATCGGGCTCTGTTGTCAACCCCATTCTTGCAGTCAACTTGGCTCTGCATCTCATGTCCAccgacatacatggtgagctactggacaaactggaaaaagcagtccatatggagTGACATAAGCTTTTACTGCTGGGGGGAACAAACAGCTCTCGTAGTCAGCGTGAACACCACAGAGAGGCCGCGcaGGGACAATACACAGCAGGTAGGCAGCTGTGGAGATGAGTGAAGACTGGCGTTTCAGAAGACAGCATATCTTAGACGTTATCCCTCTCAAGTGTGCAGGAATGAGTGATGCTTGaagtgtgcgtgtgcatgtgtgttggtCTCTAGGGTACACACAAACATACGAGTATGCACGAAGTAGTACACAAACACACTCGGAGGCTGTTTTCAACACCAAAGCTTCTTACAAACAGCTGGACTGTGACTGGATCACTGCGGCTTTATGAGAGTGAGTGGCATTAATGCTGTGTTTACCTTCTCTTGATTATGTATTGGCTTGTTTGTAGAGGAGACTGTGGCAATGTTGATGTTTATGTACTGGCATATACATTGGCATCAAAAGAAAATCACTGaacattaatactattattatattattctagaAAATAAGGTAAGCTGCCAATGCTTTTCAGCAAAAATATAAACAGTTATGAAACACAAACTCtttaggaaaaaataaaactgtca

Function

GO:

id name namespace
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0019646 aerobic electron transport chain biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0006812 cation transport biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00014365 lncRNA upstream 29160 22807973 ~ 22811997 (+) True XLOC_007278
TCONS_00014364 lncRNA upstream 33051 22807498 ~ 22808106 (+) False XLOC_007278
TCONS_00014361 lncRNA upstream 334413 22498906 ~ 22506744 (+) True XLOC_007276
TCONS_00016200 lncRNA upstream 473236 22365130 ~ 22367921 (+) True XLOC_007271
TCONS_00014352 lncRNA upstream 517112 22318756 ~ 22324045 (+) False XLOC_007271
TCONS_00014368 lncRNA downstream 116916 23076128 ~ 23372716 (+) False XLOC_007280
TCONS_00014383 lncRNA downstream 750430 23709642 ~ 23710588 (+) True XLOC_007284
TCONS_00014388 lncRNA downstream 1001516 23960728 ~ 23964141 (+) True XLOC_007287
TCONS_00014394 lncRNA downstream 1255834 24215046 ~ 24217788 (+) False XLOC_007292
TCONS_00016205 lncRNA downstream 1271699 24230911 ~ 24234703 (+) True XLOC_007293
TCONS_00014362 mRNA upstream 132380 22591624 ~ 22708777 (+) False XLOC_007277
TCONS_00014363 mRNA upstream 144329 22680485 ~ 22696828 (+) True XLOC_007277
TCONS_00014360 mRNA upstream 317358 22498757 ~ 22523799 (+) False XLOC_007276
TCONS_00014359 mRNA upstream 361677 22467698 ~ 22479480 (+) True XLOC_007275
TCONS_00014358 mRNA upstream 362444 22467672 ~ 22478713 (+) False XLOC_007275
TCONS_00014369 mRNA downstream 116995 23076207 ~ 23479421 (+) False XLOC_007280
TCONS_00014370 mRNA downstream 198809 23158021 ~ 23479577 (+) False XLOC_007280
TCONS_00014371 mRNA downstream 225305 23184517 ~ 23479577 (+) False XLOC_007280
TCONS_00014373 mRNA downstream 558898 23518110 ~ 23591678 (+) False XLOC_007281
TCONS_00014375 mRNA downstream 561774 23520986 ~ 23591678 (+) False XLOC_007281
TCONS_00014351 other upstream 522156 22316234 ~ 22319001 (+) False XLOC_007271
TCONS_00014324 other upstream 1095673 21739616 ~ 21745484 (+) True XLOC_007257
TCONS_00014315 other upstream 1162240 21671107 ~ 21678917 (+) False XLOC_007255
TCONS_00014313 other upstream 1595384 21238682 ~ 21245773 (+) False XLOC_007253
TCONS_00014275 other upstream 4041599 18799434 ~ 18799558 (+) True XLOC_007232
TCONS_00014367 other downstream 116915 23076127 ~ 23155656 (+) False XLOC_007280
TCONS_00014372 other downstream 227900 23187112 ~ 23372472 (+) True XLOC_007280
TCONS_00014405 other downstream 1398188 24357400 ~ 24357517 (+) True XLOC_007298
TCONS_00014442 other downstream 3837692 26796904 ~ 26830566 (+) False XLOC_007327
TCONS_00014490 other downstream 7454565 30413777 ~ 30424854 (+) False XLOC_007352

Expression Profile

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