RNA id: TCONS_00014412


Basic Information

Item Value
RNA id TCONS_00014412
length 1062
lncRNA type lincRNA
GC content 0.38
exon number 6
gene id XLOC_007303
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 25052709 ~ 25055796 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACCATTTGGCACAAAGGATACTTTAAGAAGCCGAAAACATACTCCTCACTCATTGCATGACTTCAAGGCAGACATAATAAAAAGGTATGTATGTTCATTCAATGCAGATCAACACAGTGATGTGGAAGGTCAAAGTGGGGAGCTGTCTGATGAAGGTCAAGATGACAATAATGATGTGACAGACCTGCCaaactgcatagaaaaaaaatggctttgttgtttctaaaactggaGAGCACTTTTAATGTATCTTACAGGTGTATAGAAGAGGTTGTTAAGGAGTTCAATTTTATATCTTGATCAGCATCTGGACCCATCATCAAAGttGTTGCAGATAAAATGGGCAAGAAATAAGGGATATCTTGGAGCGCTGGCCTGCATTATCAGGTGCAACAGAGATAAATGAAGAATTCAAGAGGATAACCACTGTAGGTCTTGAATCCACATTTATGGCCAAACTTGACAAACGCACCCAAAACTAATGGACCTGGCCTCATCCAGGGGAGGAGCTAAAGGGGAAAGAATCAGAAGGATTAAGGATATGCTTCTTGAGAACAATGCAGTTGAAGTATGGAGAGAAGTAGCCATTCACTGTCTTGTTGTCTATCTTGGAGAGAAAGAAGAGGATCTTTTTAAGGAGTTTGCTGTGActaatctattttttttatcttgcttTACAAGAATACACAAGAATTATTGGTGATCTGTCAACTATGGAATTAAACCACAAGACGGGAACCATCATTGTTGAGAATCCTGATTGGAATGGATAACTCAAGGTGTTGTGCTCTGCTAACGGGCATAATATATGCTCTGAATCTGAGCTACCCCAAGGAGCTTAAATATACTTGTTAAGTGTTTCAGAAGCTGTTTCTTGAACTTGATGGACTGAAGCCCAGTGTAAAAGTAATGCGTCTCAAGAACAGCATTTTCTGAAGCCTCTACTTATTTCAAAGTACATTTTGCTCTTTATGTTGCaactatattgttttgtattttgaagTCCACATGCTGATCTTTTTAATTTCATACTGTTTATATGAATGGTGGCATTtacata

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0030182 neuron differentiation biological_process
GO:0006413 translational initiation biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0060284 regulation of cell development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000163460

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016207 lncRNA upstream 6041 25045421 ~ 25046769 (+) True XLOC_007302
TCONS_00014410 lncRNA upstream 6453 25043810 ~ 25046357 (+) False XLOC_007302
TCONS_00016206 lncRNA upstream 174229 24877102 ~ 24878581 (+) True XLOC_007300
TCONS_00014402 lncRNA upstream 769091 24280386 ~ 24283719 (+) True XLOC_007296
TCONS_00014401 lncRNA upstream 769102 24280220 ~ 24283708 (+) False XLOC_007296
TCONS_00016209 lncRNA downstream 983 25056457 ~ 25058284 (+) True XLOC_007304
TCONS_00016210 lncRNA downstream 40414 25095888 ~ 25106060 (+) False XLOC_007305
TCONS_00016211 lncRNA downstream 44737 25100211 ~ 25106060 (+) False XLOC_007305
TCONS_00016212 lncRNA downstream 44774 25100248 ~ 25106060 (+) False XLOC_007305
TCONS_00016213 lncRNA downstream 44795 25100269 ~ 25106060 (+) False XLOC_007305
TCONS_00014409 mRNA upstream 51226 24935131 ~ 25001584 (+) True XLOC_007301
TCONS_00014408 mRNA upstream 55703 24934736 ~ 24997107 (+) False XLOC_007301
TCONS_00014406 mRNA upstream 179156 24840669 ~ 24873654 (+) False XLOC_007299
TCONS_00014407 mRNA upstream 179895 24845941 ~ 24872915 (+) True XLOC_007299
TCONS_00014404 mRNA upstream 747724 24284756 ~ 24305086 (+) True XLOC_007297
TCONS_00014416 mRNA downstream 409207 25464681 ~ 25490985 (+) False XLOC_007307
TCONS_00014415 mRNA downstream 409207 25464681 ~ 25490985 (+) False XLOC_007307
TCONS_00014417 mRNA downstream 409872 25465346 ~ 25502537 (+) True XLOC_007307
TCONS_00014418 mRNA downstream 449994 25505468 ~ 25510955 (+) True XLOC_007308
TCONS_00014419 mRNA downstream 761400 25816874 ~ 25904994 (+) False XLOC_007311
TCONS_00014405 other upstream 695293 24357400 ~ 24357517 (+) True XLOC_007298
TCONS_00014372 other upstream 1680338 23187112 ~ 23372472 (+) True XLOC_007280
TCONS_00014367 other upstream 1897154 23076127 ~ 23155656 (+) False XLOC_007280
TCONS_00014351 other upstream 2733809 22316234 ~ 22319001 (+) False XLOC_007271
TCONS_00014324 other upstream 3307326 21739616 ~ 21745484 (+) True XLOC_007257
TCONS_00014442 other downstream 1741430 26796904 ~ 26830566 (+) False XLOC_007327
TCONS_00014490 other downstream 5358303 30413777 ~ 30424854 (+) False XLOC_007352
TCONS_00014495 other downstream 5532493 30587967 ~ 30620257 (+) False XLOC_007356
TCONS_00014499 other downstream 5685514 30740988 ~ 30741116 (+) True XLOC_007359
TCONS_00014522 other downstream 6454467 31509941 ~ 31519774 (+) True XLOC_007368

Expression Profile

//