RNA id: CI01000016_00012244_00028573.mRNA


Basic Information

Item Value
RNA id CI01000016_00012244_00028573.mRNA
length 2455
RNA type mRNA
GC content 0.51
exon number 11
gene id CI01000016_00012244_00028573
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 11615 ~ 28573 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATGAAGGTGACCACCAGCACAGCACCATGGGGAGCGAAGGGGGCACGGCAGGGGAAGGTACCCCTCCTCCCAAGCGCAAGGGAAAGTTCTCTACCCTGGAATCAGGTGAGGCCCATGGCCACAAGACACACTATGTGAAGAATGGTCACACTCTGCCTGTAGGAGTTGGTGGAGGTCTGGGGCTAGAGCAGGTTCACTCGCCCTCTGAATCTGAATTCAGGGTCAACCCTGTCTGGCTGCCACAGCACGATGACCGCAGAGGTCGCGCCCCCTCCGATGGGGATCATCGCGGAGCATTGGGCCCCCGGGCCTCCAATCAGGACGAAGGCAGGAGAAGTGGTTGGTCTGTCGGGACGGAGGACTGGAAATCTAATCTAGCCTGGCAGGGAGATGATATCCGACGTGGAGGAAGACCTCACGCTGAAGTGGACAAGAGGCCTGGGCTAATGAAAGCCCCATCTGAGGATGGGCGCAGGACTCGCCCCGAATCAGACTGGAAGCCGACGCTTCCCCGTCACTCGTCTGTTGAAGAGGGAAGGGGAAGACGAGAGTCTGACAGCAGTCAATACGTTCCTAACTCAGAGGTTCTGAGGGACACACTGCGAGAGCCTCTGCCCCCCAAGCAATCTGTCATGCCCCCGAAATGGCTGATGACCTCCACCCCGGAATCCGGTGTTGACAGCTTGCCTCGCACCCCTGTCCACAACCCTGCAGCTGGACCATCCTCAATGGGCTCTGTCCCAACTCAGCCCACTAAACAGCCCCCCCTCCCTCCACCCAAGCCAATCAACCGTAGCAACAACCCTGCCATGTTGGCCTCCACCCTGCACGGGGGTGACGGCAGCGATTTCCCCCTCTACTGGTCCTGTTGGAAGCGTGAGGGTGACCATGACGTCTACCTGTCCCTGCCTGTCTACCTCTGCCGGCGGGCAGGAGGCATGCGCACAGAGGAACCGCCTGCCCGTCAAGCACCCGTTCCCTTACACATCATGATCCAGAGGGCGCTCAGTAGCCCAGGACCCACCCTCCCACACCCAGATGGCTCCCAGCGTGCCCACTCACTGCTGTTTGAGACACCACCGGAGTACCAGGGCGGCCGCCCACTGCCAGTCACCATCCAGCCTCTCAAACTATGTCTGGTGGGGGACCTGAGCGTCAGCATCATCCCTGAAGGAAACAACAGCAGCGAGGAAGAGGAAGATGAGGAAGATCAGCAGCCAGAGGAGAGCGATTCAGACGGACCCGTGCTGTACAAGGATGATGAATCAGATGAAGACGAGGAGGATGATAGCCCACCAAGTGCTCTGGCCAGCAGGGTGAAAAGGAAGGACACATTGGCGCTGAAGCTGAGCAGTCGGCCCTCTGCCCCAGACAGACAGGCTCCTGAGAGGCAGGCCAAAGTAGAGCACACGGGTCTGTCGTGGCAGAGCAAGGAGCAGTGGGAGGCCATCCGCACACAGATTGCCAAAAACGAAGCGGACAGACAAGCAGAGGTCAGGGAGATCAAGCGCAGACTCACCAGAAAGTTGAGTCAACGACCGACTGTAGCCGAACTACAGGCTCGGAAAATATTACGTTTCCACGAGTATGTGGAAGTCACGTGCGCTCAGGACTATGACCGCCGTGCTGACAAGCCATGGACCAAACTCACCCCTGCAGACAAGGGTCACCTGGAGCATTTAGAAACAAATCAAAACAAAAACAAAACAGACCGTTTCTCAGTTGTCCACCCACTGACGTGTGGGACGGGTGACCTCTGGGGGACAGATGCAGTATTTCTCCTGGACTTTAGGGGACCCACGTGCCAAGACCGAGAGGGATGAAGGACTTTTTAGAGGATGTTACTTGTGCCAATGGCAGATATTCCTCTCTCTACTCTCTGAATGGCCTTTTTTCTGCTTTTACTTCATATGATAAACTTTATTTCCTTTCAGGGAAGTGTAACAAAGTTAAAAATAATAGTAATAATAATGATGTGACAATAATAAATACAATAATAAGTGTTAGTTACTGACAAATAGCAGGGCAGACAGAGGAACTGCAAGAATAAGGCCTGAGCCTGGACATTAATTGTGTATTTGTGTATGTTTGTATAGGCTGCTGTAATTTTTCTCTTAGTTTGGAACGTTCTAAATGTTAGATACTTTAAGGCTCAAGATTTTTTTTTTTTTATTTCATAACTTTGGCTTTGGCCCTCTTTATTCAAGACAGGGTTACAGATTCCCCCTACTTTGTGGTCCTCACTGTTTGAAAGGAATAGAACATAGGTTAAATTTTTAGATAGAATGTAAGCGTTGCATATCTCACTATTGATCTACAGCGAAACTGTGATCTGTTATCTTTTACTATCTTTTTTTATTAATCATATCACCTCTGTAAAAGTGAGGTCCAGCTATTTCAGTTTTAAGAAGTGTCCAAATTATGTTTACAAAATATTTTATTTCTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106734 lncRNA upstream 30785 59358 ~ 59595 (-) True G93805
TU106730 lncRNA upstream 34244 62817 ~ 150965 (-) True G93801
TU106731 lncRNA upstream 103979 132552 ~ 138874 (-) True G93802
TU106764 lncRNA upstream 160031 188604 ~ 189338 (-) True G93829
TU106770 lncRNA upstream 170585 199158 ~ 202946 (-) True G93835
CI01000016_00002941_00010117.mRNA mRNA downstream 1498 2493 ~ 10117 (-) True CI01000016_00002941_00010117
CI01000016_00068703_00072323.mRNA mRNA upstream 40085 68658 ~ 73081 (-) True CI01000016_00068703_00072323
CI01000016_00079894_00094596.mRNA mRNA upstream 50371 78944 ~ 94596 (-) True CI01000016_00079894_00094596
CI01000016_00099623_00100245.mRNA mRNA upstream 70261 98834 ~ 100245 (-) True CI01000016_00099623_00100245
CI01000016_00153934_00154312.mRNA mRNA upstream 125335 153908 ~ 155622 (-) True CI01000016_00153934_00154312
CI01000016_00166492_00172759.mRNA mRNA upstream 137512 166085 ~ 172759 (-) True CI01000016_00166492_00172759
TU107853 other upstream 2242263 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 2956687 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 3607034 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 3837188 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 4884135 4912708 ~ 4923404 (-) True G97040

Expression Profile