RNA id: CI01000016_00200989_00201760.mRNA



Basic Information


Item Value
RNA id CI01000016_00200989_00201760.mRNA
length 1094
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000016_00200989_00201760
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 200721 ~ 202139 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATATATCGCAGTAGAGACCAATTCCTCTCAAATATTTTTCATGAATAGCTAGCTTCAATTTTTTTTTTTTTTTTTTCAATGATAGAAAGGCTGTTGTATAGCTCAGGCTTGTTTACAGTATGTGACAGAATACAGATAATTAAGAGAAAAGATTGTGTAAGCATAAGTTGCATCAATGTTAGTAGCAAAACGTTTGCATTTTTCTAATATTATTATTATATGCTTTCATTTGGCAGGTGTGTGAAACCATCGAGGTTGGAAGTGCAATGGCGTCCTCTGGAGACTTTCAGGTTAAGGAACTGGACAAGCGTGCCTCAGGACAGGCTTTTGAAGTCATCCTGAGTCCCTCGGCTCCAGATGCCAAGGGAGAATTCCCACTTTCCACCCCCAAGAAGAAGGAGGTATCTCTGGACGAGATCCAGAAAAAACTGGACGCAGCAGAGGAGAGACGCAAGAACCATGAGGCAGAGGTCCTGAAGCATTTGGCTGAGAAACGAGAGCATGAGAAGGAGGTCCTTCAGAAAGCAATGGAGGAGAACAACAACTTCAGCAAGATGGCAGAGGAGAAGCTTAACCAGAAAATGGAAGCCAACAAAGAAAACCGCACAGCACGCATGGCAGCTATGAATGAGAAATTCAAAGAGAAGGACAAGAAGCTTGAAGAGGTACGAAAGAACAAAGAAACAAAAGAGGGGGGCGAGGGTGAAAACTAAGTTTCCTCTCTCATTTTCCTTTTCATTTAGGGTATAGTATTGGGTTTTTTAATGTATCCAAAGATTTATTTTTTGTTCCATTAAATGGTCAGTTTTCCATGTTTGGATCCATGTACTTGCCACTTTTTTATTAAGGGGTTTTGGGGAAAAGCTGGTGCACAACATTTCATCACTTTGTGTGTATTCAGTTCTGTCTTTCATCATTCCCTCTAACCTGTAGATTTGTCCAGTTGCAGCTCTATAGCGTTTAAAATGAGCAGTGTTTTACTGATAGGGAAGCATGCCTGTGTTATGCATAGGTCTAATATATACTTGGTATATTGCATTGTGCAAGTCCACCTGTTCCCTTGTATGTCAGTACTGCCATCCTTCAAGCTTA

Function


GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K04381 STMN1; stathmin

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU105989 lncRNA upstream 13050 176999 ~ 187671 (+) True G93143
TU105931 lncRNA upstream 46041 153963 ~ 154680 (+) True G93086
TU105979 lncRNA upstream 70561 129313 ~ 130160 (+) True G93133
TU105915 lncRNA upstream 143785 56479 ~ 56936 (+) True G93072
TU105914 lncRNA upstream 172825 23660 ~ 27896 (+) True G93071
TU106081 lncRNA downstream 82061 284200 ~ 284433 (+) True G93215
TU106082 lncRNA downstream 82454 284593 ~ 284850 (+) True G93216
TU106091 lncRNA downstream 107150 309289 ~ 368179 (+) True G93224
TU106007 lncRNA downstream 248474 450613 ~ 457007 (+) True G93157
TU106015 lncRNA downstream 258301 460440 ~ 463979 (+) True G93161
CI01000016_00116237_00122376.mRNA mRNA upstream 76947 115163 ~ 123774 (+) True CI01000016_00116237_00122376
CI01000016_00104268_00104615.mRNA mRNA upstream 95672 100537 ~ 105049 (+) True CI01000016_00104268_00104615
CI01000016_00042281_00046080.mRNA mRNA upstream 154539 42244 ~ 46182 (+) True CI01000016_00042281_00046080
CI01000016_00206576_00207640.mRNA mRNA downstream 4437 206576 ~ 207935 (+) True CI01000016_00206576_00207640
CI01000016_00229474_00234707.mRNA mRNA downstream 27283 229422 ~ 234915 (+) True CI01000016_00229474_00234707
CI01000016_00294886_00298452.mRNA mRNA downstream 92747 294886 ~ 299161 (+) True CI01000016_00294886_00298452
CI01000016_00318676_00446341.mRNA mRNA downstream 116537 318676 ~ 446341 (+) True CI01000016_00318676_00446341
CI01000016_00496095_00506965.mRNA mRNA downstream 293956 496095 ~ 507033 (+) True CI01000016_00496095_00506965
TU106281 other downstream 703261 905400 ~ 927532 (+) True G93406
TU108565 other downstream 3660036 3862175 ~ 3862305 (+) True G95439
TU108786 other downstream 4070497 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 4632419 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 5017741 5219880 ~ 5225941 (+) True G95792

Expression Profile