RNA id: CI01000016_00229474_00234707.mRNA


Basic Information

Item Value
RNA id CI01000016_00229474_00234707.mRNA
length 1718
RNA type mRNA
GC content 0.50
exon number 2
gene id CI01000016_00229474_00234707
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 229422 ~ 234915 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTAAATGTCCTCCTTTGGATCTCTCAGGGCTCAACATTACCCAGAACACCATGATCATGGATTCATCAAGTCCGGCAGAGTTCTACGAGGACAACGCTTCACTGTTGTCCTTAGACTCCAGCGTATTCTTCAGCGAGCCCGCACTGCCGAGTGACGATCCACTGGATTTCTTCATTATAAATGTCGGAGGCAGCCGCTATATCCTCTCTCAGGAACTGTTGGCCTCTCACCCAGAAACTCGCCTGGGCAAGCTGGCCCTCTCCAATCGAGACTCTGCTTTAGACCTGTGCGACGATGCAGATTTCTTGGAGAACGAGTTCTTCTTTGACCGCAACTCACAGACCTTCCAGTACATCATGAACTTCTACAAGACAGGTCACTTACATGTGCGAGAGGAGCTATGCGTGATCTCGTTCCTTCAGGAGATCGAGTACTGGGGCATCGATGAGCTCCGCATAGACAGCTGTTGCAGGGATAAGTACTACCGCCGGAAGGAGATGAAAGAGACGTTGGATGTTAGTAATGAAGCTGAGATAATGGACAATGAGGAGGAGGACTTCACCGGAGCTTTGTGTCAGGACTTACGTCAGCGCCTCTGGGACCTCATGGAGAAGCCGGAGTCCTCCAAGGCGGCCAAGACTTTTGGGACGCTGTCCATGTTCTTTTTGGTGGTGTCCATCGTGAACATGGCTTTGATTTCGCTGGACTTCACTATACTTGGTGCACCTATCATCTTGGATGTTCTTGAGTACATTTGTATTATTTGGTTCACCGGTGAGCTGGTACTCAGGTTCATGTGTGTCAGAGATAAGTGTAAGTTCAGCAGGAGTGTGGTGAATATCATTGACCTGCTGGCTATTCTGCCCTTCTATGTGACTCTGGCTGTGGAAAGCCTTCATGGAGAATCTACGGAGCTGGAGAACGTTGGACGGGTAGTTCAGGTGCTGCGGCTAATGAGGTCACTCAGGATGCTTAAACTTGGCCGACACTCCACAGGTCTCAAGTCTTTGGGCATGACGATTGCCCAGTGCTACGAGGAAGTTGGCCTCCTGATGCTGTTCCTTTCTGTGGGCATCTCCATCTTCGCCACAGTGGAATACGCCATCGAACACGACATGCCGGAGACCACTTTCACCAACGTGCCCAGTGCCTGGTGGTGGGCCACCACGTCCATGACCACAGTGGGGTACGGAGACATCCGTCCAGATACGGCTCTAGGAAAGGTGATGGCCTTCATCTGCATCCTCTCTGGCATTCTCATCCTTGCGCTGCCTATTGCCATCATCAACGATCGTTTCTCTGCCTGCTACTTCACGCTTAAAATGAAGGAAGCGGCGTTGCGGCACGGAGAGGCACTGAAGCGACTGACACGCAGCTCGGCCTCGGATATGTCGGCGATAGGGGTGAACCTGCGGGACGCCTACGCCAGAAGCGTGCTGGAGATGCTGCGGCTGCAGGGGCGAGAGCGAGCCAGCACACGCAGCAGTGCAGGAGATCTCTGGTGGTAACAGTAGGCCTGCAAGCTGCAGGAGAGAGAGAGAGAGGTTTTGTTTTATTTTAAGGACCAGAAAACCTTTAAAGGGGTAATATCATAAGGAATCAAAATTTTCTTGATCTTCATTTTGCCTCAAATTATAATTTACTAAAATCACACTCATGTTTCTGATGTCACGAACCTGCAATTAATTCCTAACTTTGCAATCCTGTAACAATCTA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K04934 KCNV1, KV8.1; potassium channel subfamily V member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105989 lncRNA upstream 41751 176999 ~ 187671 (+) True G93143
TU105931 lncRNA upstream 74742 153963 ~ 154680 (+) True G93086
TU105979 lncRNA upstream 99262 129313 ~ 130160 (+) True G93133
TU105915 lncRNA upstream 172486 56479 ~ 56936 (+) True G93072
TU105914 lncRNA upstream 201526 23660 ~ 27896 (+) True G93071
TU106081 lncRNA downstream 49285 284200 ~ 284433 (+) True G93215
TU106082 lncRNA downstream 49678 284593 ~ 284850 (+) True G93216
TU106091 lncRNA downstream 74374 309289 ~ 368179 (+) True G93224
TU106007 lncRNA downstream 215698 450613 ~ 457007 (+) True G93157
TU106015 lncRNA downstream 225525 460440 ~ 463979 (+) True G93161
CI01000016_00206576_00207640.mRNA mRNA upstream 21487 206576 ~ 207935 (+) True CI01000016_00206576_00207640
CI01000016_00200989_00201760.mRNA mRNA upstream 27283 200721 ~ 202139 (+) True CI01000016_00200989_00201760
CI01000016_00116237_00122376.mRNA mRNA upstream 105648 115163 ~ 123774 (+) True CI01000016_00116237_00122376
CI01000016_00104268_00104615.mRNA mRNA upstream 124373 100537 ~ 105049 (+) True CI01000016_00104268_00104615
CI01000016_00042281_00046080.mRNA mRNA upstream 183240 42244 ~ 46182 (+) True CI01000016_00042281_00046080
CI01000016_00294886_00298452.mRNA mRNA downstream 59971 294886 ~ 299161 (+) True CI01000016_00294886_00298452
CI01000016_00318676_00446341.mRNA mRNA downstream 83761 318676 ~ 446341 (+) True CI01000016_00318676_00446341
CI01000016_00496095_00506965.mRNA mRNA downstream 261180 496095 ~ 507033 (+) True CI01000016_00496095_00506965
CI01000016_00540871_00541608.mRNA mRNA downstream 305717 540632 ~ 541723 (+) True CI01000016_00540871_00541608
CI01000016_00569502_00581271.mRNA mRNA downstream 334587 569502 ~ 581499 (+) True CI01000016_00569502_00581271
TU106281 other downstream 670485 905400 ~ 927532 (+) True G93406
TU108565 other downstream 3627260 3862175 ~ 3862305 (+) True G95439
TU108786 other downstream 4037721 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 4599643 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 4984965 5219880 ~ 5225941 (+) True G95792

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021376 True 1970 mRNA 0.48 2 NC_007127.7 40991911 ~ 41004731 (-)
bowfin (Amia calva) AMCG00021810 True 1458 mRNA 0.52 2 CM030130.1 30482576 ~ 30492325 (+)