RNA id: CI01000016_00294886_00298452.mRNA



Basic Information


Item Value
RNA id CI01000016_00294886_00298452.mRNA
length 1465
RNA type mRNA
GC content 0.44
exon number 4
gene id CI01000016_00294886_00298452
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 294886 ~ 299161 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATTAGGGTATGATTTGCCGCTGAGCTTAATGGAGCTTAAAGAAAGTGGCCCTGAGCTTCTCTCCTGTCTGTCCCTCCCATCACATCAGGAGAGTGCTCGTGAAGGCTGGTGTCACCTTGATATCAATGACCTGCCACTTTGCATGGAGGATTTAGGACTGTATAGAGCTGAGGTCATGAGCTGGTATGGTGACTGTGGAAAGCAGGAGACTGATAGACAAGAAAGAGAGACAGAAAATACACTGAATCAGAGAAAGATCACCAAAGAAATAGTCACAAAGACAAACAACAAGGTTTTTGGAGTCTGCAGGATTAATCTCTCTGAGCATCACCCTACCAGTCTTCACAACATTCAGACCCTCCCATACCATCACAAGAACCGGCCCAGAGTTCATGTACTTGAAGAGTCCAGGGTAGAACAGCCGGTCCTTCAGGTTGATGTAATGCTGCTTCAACAGCTTCTCAGATGCCTGAAGGAACTTCCTCCCACCAGTTTGAAGCCCCTCTGCTCAAAGTTCTTGATGATTTCTCCCATGAGGCCTCGCTGCACACCATTGGGTTTAATGGCAATGAAGGTGTCAGCCTTAATGACTAGCTTAAAAAAAGATATGCCTACCGCGTACGTCTCTACAGATGAGCGGTCATCGCGGCATTGTGCCTTAAAATTGCTTGTCATAAATTACCCCTCCCCGTGTTCGCCTGCAGCACTTGATGTCTTGAATTCGGGCCATTTTGCAAGCTGTATTCAAGCATGAACTTCAATTTGCTTTTCATAAAGGGATTACACAGCCACTATTGTCACTCTTCACCACATGTACCTTTCACTTATGAAGCACAATTGCATTCTGATTTCTTAGCAACTGGTGTGGGCCCCCGATGCCGTTCCTGGCCCCTGCCTTTAGATTCATCCCATTTCGGTAGGATGTCTGAAGTAATAGCAGATAAAGATGAATACAGGAATGAGGTTATTGAGGTTGACAGGAAGAGTGAGCGAGAGAAGATAGCAAAATCATTATGAGAATGTATGAGTCTTGGGGTTTTAGGGTTTGTATGTGGAAGGTTAACTGTGCTAGAAAGATTCAGAGCTGTTTTGGTGTTCTCCATAAATTCATGGAGTACTTAAAGTCAGCCGTGAGATATTTGCAATTGCACACCTGGCATCTATAGGTATATTCGACATCTATCACACCATCTTCATGCAGAGTGCTGAAAGATGGGTGTCTTAAGTCAAGCGTTCTCATTCATTCACATTTAAACACTGCCAGCTGTGTTTCTCCAGACGTCTGACCCAAGTCTGCTATCGGTGCCAGGCAACTCAGTGCCTCTAATTTTACGTTTTCTAACTTTAGGACTATTTTCGCTCTTATAAATCCTAAGTGGGCACAAAAGGGCTATTGAGTGAAGCACATGACTGCATTATTTTACAGGGATTAGTCCAAGACCCAGTGGAAACAAAAAAGATTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU106082 lncRNA upstream 10036 284593 ~ 284850 (+) True G93216
TU106081 lncRNA upstream 10453 284200 ~ 284433 (+) True G93215
TU105998 lncRNA upstream 43312 182328 ~ 251574 (+) True G93149
TU105989 lncRNA upstream 107215 176999 ~ 187671 (+) True G93143
TU105931 lncRNA upstream 140206 153963 ~ 154680 (+) True G93086
TU106091 lncRNA downstream 10128 309289 ~ 368179 (+) True G93224
TU106007 lncRNA downstream 151452 450613 ~ 457007 (+) True G93157
TU106015 lncRNA downstream 161279 460440 ~ 463979 (+) True G93161
TU106157 lncRNA downstream 318271 617432 ~ 617962 (+) True G93290
TU106167 lncRNA downstream 334941 634102 ~ 634319 (+) True G93300
CI01000016_00229474_00234707.mRNA mRNA upstream 59971 229422 ~ 234915 (+) True CI01000016_00229474_00234707
CI01000016_00206576_00207640.mRNA mRNA upstream 86951 206576 ~ 207935 (+) True CI01000016_00206576_00207640
CI01000016_00200989_00201760.mRNA mRNA upstream 92747 200721 ~ 202139 (+) True CI01000016_00200989_00201760
CI01000016_00116237_00122376.mRNA mRNA upstream 171112 115163 ~ 123774 (+) True CI01000016_00116237_00122376
CI01000016_00104268_00104615.mRNA mRNA upstream 189837 100537 ~ 105049 (+) True CI01000016_00104268_00104615
CI01000016_00318676_00446341.mRNA mRNA downstream 19515 318676 ~ 446341 (+) True CI01000016_00318676_00446341
CI01000016_00496095_00506965.mRNA mRNA downstream 196934 496095 ~ 507033 (+) True CI01000016_00496095_00506965
CI01000016_00540871_00541608.mRNA mRNA downstream 241471 540632 ~ 541723 (+) True CI01000016_00540871_00541608
CI01000016_00569502_00581271.mRNA mRNA downstream 270341 569502 ~ 581499 (+) True CI01000016_00569502_00581271
CI01000016_00772375_00772848.mRNA mRNA downstream 473109 772270 ~ 772889 (+) True CI01000016_00772375_00772848
TU106281 other downstream 606239 905400 ~ 927532 (+) True G93406
TU108565 other downstream 3563014 3862175 ~ 3862305 (+) True G95439
TU108786 other downstream 3973475 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 4535397 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 4920719 5219880 ~ 5225941 (+) True G95792

Expression Profile