RNA id: CI01000016_00513504_00514565.mRNA


Basic Information

Item Value
RNA id CI01000016_00513504_00514565.mRNA
length 2621
RNA type mRNA
GC content 0.41
exon number 1
gene id CI01000016_00513504_00514565
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 512124 ~ 514744 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAGAAGTGTTGCCATTTATTCATAACGTTATATTCATCATTATATCATTGCACTTGGCAGGTGTGAATTTCTCAATTTGGACAGAGCACCATGCGTAGGTTGCCGTGCCTTGCCTCCGAGCCAAGAGGAGAAATCCCACTGTGCTACTGACAGGAATTTACGCGCAGCTGAACAAGGATGCCAGAGGAGCTTGCAAACTGCAGTGTGTGTTGCTGTACCACGACCAATAAGATACTCATGGTGGTCTTCATGATATCACTGATACTTGCCATACTCTTTGGAAACCTCTTGACATTAGCAGTGGTCTTCGGAACTAAACATTTCCACACTCCACAGGGTTATTTAAAAGCCTCACTGGCCGTGGCAGACCTGGCTGTGGGAATTTTTGTGGTACCCATTTCGGTTTACGCTGAAATATCCCTCATGATCTACAATTCAATGCCGGAGTGGACAGCGCGCAATTCCCAATCCACTCCTTTCCACCCGTGCAGTTTCATCGGACCTGTGTTTGCGGGATGCACTTTAGTGTCCATTACAACCATTTTCCTCCTGACCATTGAAAGGAGCATTGCCGTTTTGAAGCCACTGCACAAGGAATCTGTCATAACTAAAAAAAGAACAAGCATACTAATAGTCTTTTCCTGGATGGGCAGTTTTTTCCTGGCAGTATCTCCAATGGTTTTCAGTAATGAAATCGCGTTGGAGTACAATCCTTGCAGCCGCATGTGCAATTACGCGCTGGGAAGCACAGACTTCCCATCCCAGGCTTGGAACATTCTCTTACTCTTCCCTGCCTTTGACTTTACGCTGCTCGGAGGTACTGTTGTCATCAATATCATATCGCTCACCACAATCCGCCAGCATTCAAAAAGAAGAAAACATCTCGCAGAGACAGAGAGGCAAAACGCAACGAAACCAACCTTCTCCGACATCAAGGCTGCCAAGACGATAGGCACTCTGACGTTGGCTTTCACTGCTTCTTTCACTCCCATCGCCGTGTTTGTAGTTGGAAATGTGTTGGGAAATGAATGGTGCACTTTTTCATTTTTTGCCTTTTGGATTTTGACCACTAACAGCTGCTGGAATGTTATTATATATGGTGTGAGAGACCAGAAGTTCAGAAGTCGTGTGTATCAGCTGCTCATATCCACTCATTTGAACACTGTGCCCAAAAAAACTGAGTATGAAAACACTGTAAATGAGGGGAAACTCAATGAGGAAATAGTCAAGCAAACCTAATTACTGATCTTACTGATCAATATCCCAATTTAGGTGGTGCTACTGTGTTCATAACAGGCCCCCCCAAGTTAGTATCTGGGCATTGCAAGGAAGCAAGCTGGTTAGTAGTTAGCGTACCAGCTACAATGTTCCATAAACTAGCTTATAAAAAATAGCTGGTTTGTTGCTGGTCCAAGGTCCACCTTAGACCAGCTAGTAACCATTCTAAACACAGCTGCCACCTTAACCTGCCAGCTTTTCCAATCTCCCTGGATCAACTTGAGGTTAAAGGGTTAGTTCACCCAAAAGTGAAAATTCTGTCATTAAATACACACCCTCATGTCGTTCCACACCCGTAAGACCTTCGTTCATCTTCGGAACACAAATTAAGATATTTTTGATAAAATCCAATGGCTCAGTGAAGCCTCCATTAAAAGCACTTTCAAATGCCCAGAAAGGTACTAAAGTTATATTTAAAACTTCGAAGCTTTACAAATCTTTTGTTTCGAATCAGTCGTTCGGAGCGCGTATCGAACTGCCAAAGTCACGTGAACCATTGAAATTTCGAAACACTTATGATGTAACAAAGCATCGTTTACTGAAATCATGTGACTTTGGCGCTCCGAACCACTGATTCGAAACAAAAGATTTGTAAAGCTTCAAAGCTTCATGAAGTAGTGTTTTAAAATCGCCCATCATTAGATATTGTTGAATAAAGTTGTTATTTTGTTTTGCGCACAAAAAGTATTTTCGTTGCTTCATAACATTAAGGTTGAACCACTGTAGTCACATAAACTGTTTTAAATACGTCTTTAGTACCTTTCTGGGTGTTTGAAAGTGTAAATTAACTTGCTTTCAATGGAGGCCTCACTGAGCCATCGTATTTTATCAAAAATATCTTAATTTGTGTTCTGAAGATGAACGAAGGTCTTACGGGTGTGGAACGACATGAGGGTGAGTAATTAATGACATAATTTTCATTTTTGGGTAAACTAACCCTTTAAGTGTCTTTCTTAAAGACATATTGTGGATATGGATCATCCCTTGTAATCAAACTTACTATGTTTTTATTTTCAGCCTAAATATCCAACCATTAGGCCACAATTAAGGTGCCTATGTGTTTTAATGCCTTCATAACCACCTATTGAGTGGCATCTGCTGCTATCCTCAGGTCAACTGTTTTGATTTATACTAAACTTTGCATGACTTTTCATTGTCACAAGATTTCACCATGCATTTGAATATACATAAGCATGGATCACGAAAGTCCCACAAATCTGCATTGAGGTCCTTATACATACTTGTAACATGGATGCTTCTGTAGGATGTTGATTTGCTTTTGCTTCTTTTTTCATTGATACTGAGAACTGATATTTCAAGATATTGTGTTGCTTCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106917 lncRNA downstream 2821 509071 ~ 509303 (-) True G93954
TU106892 lncRNA downstream 110352 400493 ~ 401772 (-) True G93934
TU106815 lncRNA downstream 230913 280994 ~ 281211 (-) True G93873
TU106770 lncRNA downstream 309178 199158 ~ 202946 (-) True G93835
TU106764 lncRNA downstream 322786 188604 ~ 189338 (-) True G93829
TU106952 lncRNA upstream 59556 574300 ~ 576181 (-) True G93988
TU106956 lncRNA upstream 64473 579217 ~ 579783 (-) True G93992
TU106976 lncRNA upstream 121423 636167 ~ 636370 (-) True G94011
TU106982 lncRNA upstream 129929 644673 ~ 644880 (-) True G94017
TU106968 lncRNA upstream 193306 708050 ~ 723238 (-) False G94004
CI01000016_00471859_00490955.mRNA mRNA downstream 21169 470783 ~ 490955 (-) True CI01000016_00471859_00490955
CI01000016_00456765_00460615.mRNA mRNA downstream 50915 454828 ~ 461209 (-) True CI01000016_00456765_00460615
CI01000016_00448107_00452861.mRNA mRNA downstream 59263 447858 ~ 452861 (-) True CI01000016_00448107_00452861
CI01000016_00251025_00251471.mRNA mRNA downstream 260638 250218 ~ 251486 (-) True CI01000016_00251025_00251471
CI01000016_00166492_00172759.mRNA mRNA downstream 339365 166085 ~ 172759 (-) True CI01000016_00166492_00172759
CI01000016_00581946_00586945.mRNA mRNA upstream 67122 581866 ~ 586997 (-) True CI01000016_00581946_00586945
CI01000016_00589778_00591095.mRNA mRNA upstream 74928 589672 ~ 591294 (-) True CI01000016_00589778_00591095
CI01000016_00592794_00596916.mRNA mRNA upstream 77386 592130 ~ 597102 (-) True CI01000016_00592794_00596916
CI01000016_00601605_00607255.mRNA mRNA upstream 85878 600622 ~ 607255 (-) True CI01000016_00601605_00607255
CI01000016_00679328_00729780.mRNA mRNA upstream 164048 678792 ~ 729966 (-) False CI01000016_00679328_00729780
TU107853 other upstream 1756092 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 2470516 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 3120863 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 3351017 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 4397964 4912708 ~ 4923404 (-) True G97040

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020145 True 1062 mRNA 0.47 1 NC_007127.7 40463365 ~ 40464426 (+)