RNA id: CI01000016_00589778_00591095.mRNA


Basic Information

Item Value
RNA id CI01000016_00589778_00591095.mRNA
length 1154
RNA type mRNA
GC content 0.41
exon number 5
gene id CI01000016_00589778_00591095
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 589672 ~ 591294 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTAGCTCGCTAAATGTATCGGTAGTTAAAGTACATGTAATTATTTGAAACTAGCTAACTTTGTGTGTGTTTTTTACTGAGATGGCTGCCTGTAACTTTTTTATTAACGTGCTGTGACTTTTATGATATAACTTCACGGCATCAGATTTTAAGTCGTTGCCTCAGTTTTAATAATAAAGATCAGGAGCTCAAACAATCATGTCAGTGACAGGTGAGTTAGACTCGCTCGAATCCCCCCATCAGTCCACTGATCTGAGTGAAAGGACACTGACACCAGAAGAGATCGAGAAACTCAGAAATGACCGGGTTTTAGTGTCAGACTTCAAGCAGCAGAAACTCGAATCGGATGCTCAGAAAAACTGGGACTTATTTTATAAAAGAAACACGACGAACTTTTTCAAAGACAGACACTGGACCACCAGAGAGTTTGATGAATTGAAAAACTGCAGAGAATCTGAAGGAGAGAAGCTGGTGTTGTTGGAGGCTGGCTGTGGGGTTGGAAACTGCATTTTCCCCCTTCTAGAAGAGGATCTCAATGTCTTCATCTATGCCTGTGACTTCTCTCCACGAGCTGTTGAGTTTGTGAAGCAAAATTCCTTGTATTGCACCGAGCGATGCCTTGCGTTTCAGTGTGACCTCACTAAGGATGATCTTCAGGCTACCATACAAGTAGAAACAGTGGATGTAGCCACATTGATATTTGTTTTGTCTGCAATTCATCCTGAAAAGATGCAGAAAGCCCTGGAACAGATTTTTAAGGTATTAAGACCAGGAGGTATTGTCCTCTTCAGGGACTATGGACTGTATGATCATGCCATGTTGAGGTTTAAGTCAGGCAATAAGCTGGGGGAGAATTTCTATGTAAGACAGGACGGGACCCGTTCCTTTTTCTTCTCAAGAGAGCACTTGGCTGGTTTGTTCCAACAGGCAGGATTTGAGACTCTTGTGAACGAGTATGTGTTGAGAGAAACTGTGAATAAAAAAGAGGGTCTGTGTGTTCCCCGAGTGTTCCTGCAGAGTAAATTTCGCAAACCCGTTCCCTCATAATGACCAGCATAAATTAGCCATATTTTTGTAAAAAATTTTCCAAAGTCTTGTGTATTAATTTATTGACTGTCTGCATGTTTTTTTTACTATCTCATAATGAAATAAA

Function

GO: NA

KEGG:

id description
K00599 METTL6; tRNA N(3)-methylcytidine methyltransferase METTL6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106956 lncRNA downstream 9889 579217 ~ 579783 (-) True G93992
TU106952 lncRNA downstream 13491 574300 ~ 576181 (-) True G93988
TU106917 lncRNA downstream 80369 509071 ~ 509303 (-) True G93954
TU106892 lncRNA downstream 187900 400493 ~ 401772 (-) True G93934
TU106815 lncRNA downstream 308461 280994 ~ 281211 (-) True G93873
TU106976 lncRNA upstream 44873 636167 ~ 636370 (-) True G94011
TU106982 lncRNA upstream 53379 644673 ~ 644880 (-) True G94017
TU106968 lncRNA upstream 116756 708050 ~ 723238 (-) False G94004
TU106969 lncRNA upstream 117673 708967 ~ 723299 (-) True G94004
TU107039 lncRNA upstream 154378 745672 ~ 745975 (-) True G94073
CI01000016_00581946_00586945.mRNA mRNA downstream 2675 581866 ~ 586997 (-) True CI01000016_00581946_00586945
CI01000016_00513504_00514565.mRNA mRNA downstream 74928 512124 ~ 514744 (-) True CI01000016_00513504_00514565
CI01000016_00471859_00490955.mRNA mRNA downstream 98717 470783 ~ 490955 (-) True CI01000016_00471859_00490955
CI01000016_00456765_00460615.mRNA mRNA downstream 128463 454828 ~ 461209 (-) True CI01000016_00456765_00460615
CI01000016_00448107_00452861.mRNA mRNA downstream 136811 447858 ~ 452861 (-) True CI01000016_00448107_00452861
CI01000016_00592794_00596916.mRNA mRNA upstream 836 592130 ~ 597102 (-) True CI01000016_00592794_00596916
CI01000016_00601605_00607255.mRNA mRNA upstream 9328 600622 ~ 607255 (-) True CI01000016_00601605_00607255
CI01000016_00679328_00729780.mRNA mRNA upstream 87498 678792 ~ 729966 (-) False CI01000016_00679328_00729780
CI01000016_00754785_00770356.mRNA mRNA upstream 163389 754683 ~ 770356 (-) True CI01000016_00754785_00770356
CI01000016_00775184_00778097.mRNA mRNA upstream 183364 774658 ~ 778097 (-) True CI01000016_00775184_00778097
TU107853 other upstream 1679542 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 2393966 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 3044313 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 3274467 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 4321414 4912708 ~ 4923404 (-) True G97040

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020141 True 1277 mRNA 0.39 5 NC_007127.7 40340523 ~ 40344211 (+)