RNA id: CI01000016_00601605_00607255.mRNA


Basic Information

Item Value
RNA id CI01000016_00601605_00607255.mRNA
length 1910
RNA type mRNA
GC content 0.43
exon number 6
gene id CI01000016_00601605_00607255
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 600622 ~ 607255 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCTTAGACCGGGTCAGTCCCTTCTAAAATGCAGAGCTTTTAACCATCTGAGACTCACTTTTCAGAGACACCTGGAACCGATTGACTTTAATCAGAGATGCTCCCTGAAGCACCTTCCATTTTTACCTTGCTGGATTCAGCGAGAGGGTTCAGGCGTGAGCACCCAGGGATGCCAGGGAGGCTGTCAGACCTGCTCCGTTTACAATGGCTGTCTGACGTGCAAACCCAAGCTTTTTATTCACCTGGAGAGGGACGGGATGAGGCAGATCGGAGTGTGCCTGGCCTCCTGCCCCAATGGTTTCTACGGCACCCGTTCCCCCGACAGGAACGACTGCATAAAGTGTGGGTCAGAGTGCGACTCGTGCTTTAACAGGAACTTCTGCCTGCGCTGCAGAGCGGGATCCTACTTGCACAAGGGCAAGTGCATGGAGAGCTGTCCAGATGGGCTGGTGCCCAGCGATACCAAGAAAGAGTGTGTCCCTGCATGTCCTGTGGACTGCGACTCCTGTCAGACCAGTGACACGTGTACAAGGTGTGTGCCGGGACACTACCTCCTGCATGGGCAATGTTATCACATCTGCCCGGACGAGTTTGAGTCCAACAACTCAATGGAGTGCATCCCGACAGTGCACTGTGAAGTGGGCGAATGGGGCGAGTGGAGCCCCTGCTCGCGCTTAGGAAAAACCTGCGGCTTCAAATGGGGTGAAGAAACAAGGACCAGGAAGGTCCTACAAAATCCCTCACCAATGGGGAGCGCATGCCCACAGACTTCTGAAAAGAGGGTTTGCGTTGTCAAAAAAAGAAGATTGGTATTTGTGGGACATTGCTGCTTTATGACAGACAGCAGGCCAACTCGACGCTCCATCGCTCTCCACCTCATAAACACTCAGGGCCTCAGCGCAGAGAGAGGGAAGAAGGGAAAATAAAGGAGGTGGAGATTCACATGTGAACTTCTCTGACTCCAAAGAACAATGACATGGCTTGATCACACACAAAAATGCAACAGTAAAACACACACAAAAAAAGTTCACACTTAAAGGATTAGTTCACAGAATTAAAATTTCTTGATAATTTACTCACCCGCATGTCATTCAATATGTTTATGTCTTTCTTTCTACAGTCGAAAAAAAATTAAGGTTTTTGAGGAAAACATTCCAGGATTTTTCTCCATATAGTGGACTTCATTGGGGTACAATGGGTTGAAGCTAGTGCAAGACAAGCATTTGTGGTTAATAAGTATATCATTTTTATTTTATTTTTTTAGAAAATGACTGATCGTTTTGCTAGATAAGACCCTTATTCTTTGGCTGGGATCATGTAGAGCCCTTTGAAGCTGCACTGAAACTGTGATTTGGACCTTCAACCCGTTGTACCCCAGTGAAGTCCACTATATGGAGAAAAATCCTGGAATGTTTTCCTCAAAAACCTTAATTTCTTTTTGACTGAAGAAAGAAAGACATAAACATCTTGGATGACATGGGGGTGAGAAAATTATCATGAAATTTTAATTCTGAAGTGAACTAATCCTTTATAGGCCCGTTCACACCAAGGATGATGGCTATATCTATAACAATAAAGATCAGTTCTAAAAATCATTCTAAATATAAAAGAGTCCAAACCACAACTATAACAGTAACGGCACAGAGAAACAATATCATTGGAATCACTTTCAAAACAATTTTTTCCAGCTGATGAACGATAAAAACGATAGCCAATCAGAATCCACCTACATTTAAAGCACTAGATGACATAATTGCAGCGCACACTTAGAATAAAAAGAACAATATTGTCTGCTGGTGTGGACACTAATATAGTTATCGTTATAGTTATCTCATATATATATATAATGCAATTAGTAAAAAAATATTGAAAAAAGTCTTTTTGGTTGTTTTTCATTTTAGTGAATAAA

Function

GO:

id name namespace
GO:2000054 negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106956 lncRNA downstream 20839 579217 ~ 579783 (-) True G93992
TU106952 lncRNA downstream 24441 574300 ~ 576181 (-) True G93988
TU106917 lncRNA downstream 91319 509071 ~ 509303 (-) True G93954
TU106892 lncRNA downstream 198850 400493 ~ 401772 (-) True G93934
TU106815 lncRNA downstream 319411 280994 ~ 281211 (-) True G93873
TU106976 lncRNA upstream 28912 636167 ~ 636370 (-) True G94011
TU106982 lncRNA upstream 37418 644673 ~ 644880 (-) True G94017
TU106968 lncRNA upstream 100795 708050 ~ 723238 (-) False G94004
TU106969 lncRNA upstream 101712 708967 ~ 723299 (-) True G94004
TU107039 lncRNA upstream 138417 745672 ~ 745975 (-) True G94073
CI01000016_00592794_00596916.mRNA mRNA downstream 3520 592130 ~ 597102 (-) True CI01000016_00592794_00596916
CI01000016_00589778_00591095.mRNA mRNA downstream 9328 589672 ~ 591294 (-) True CI01000016_00589778_00591095
CI01000016_00581946_00586945.mRNA mRNA downstream 13625 581866 ~ 586997 (-) True CI01000016_00581946_00586945
CI01000016_00513504_00514565.mRNA mRNA downstream 85878 512124 ~ 514744 (-) True CI01000016_00513504_00514565
CI01000016_00471859_00490955.mRNA mRNA downstream 109667 470783 ~ 490955 (-) True CI01000016_00471859_00490955
CI01000016_00679328_00729780.mRNA mRNA upstream 71537 678792 ~ 729966 (-) False CI01000016_00679328_00729780
CI01000016_00754785_00770356.mRNA mRNA upstream 147428 754683 ~ 770356 (-) True CI01000016_00754785_00770356
CI01000016_00775184_00778097.mRNA mRNA upstream 167403 774658 ~ 778097 (-) True CI01000016_00775184_00778097
CI01000016_00843272_00857193.mRNA mRNA upstream 235895 843150 ~ 857296 (-) False CI01000016_00843272_00857193
CI01000016_01088942_01089316.mRNA mRNA upstream 481297 1088552 ~ 1089339 (-) True CI01000016_01088942_01089316
TU107853 other upstream 1663581 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 2378005 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 3028352 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 3258506 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 4305453 4912708 ~ 4923404 (-) True G97040

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020138 False 2194 mRNA 0.49 6 NC_007127.7 40301056 ~ 40339027 (+)