RNA id: CI01000016_00754785_00770356.mRNA


Basic Information

Item Value
RNA id CI01000016_00754785_00770356.mRNA
length 1134
RNA type mRNA
GC content 0.42
exon number 9
gene id CI01000016_00754785_00770356
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 754683 ~ 770356 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAATAAAAGCATTGCTGTCTCTAAGGAACCAGCCATTTGATACATCAGATACATTCATTGAAAAGGCTCCATATCTACAGCAGAATTCAACTTATAAGATCAATGTCTACACTTTCAACAAAACATTAGAGTTTAAGGACAGAATCAAAAAGATTGATGCTCTAGACTTCCTGCCGTTTGAAGGGAAGGTCAATCTAAAGGATCCAGAACATGTTTTCTGTTTGCTGGAGGATTATGGCTCTGATCCTAATGATATCCCAGAGGAGCCTTTCCATTTGTACTTTGGGAGATGGATTGCAGATGGTCAAAGAGAATTAATTCGCTCTTACAGTGTGAAGAAGAGACATTTCATTGGGAACACTAGTATGGATGCTGGCCTTTCTTTCATCATGGCCAATCATGCCAAAGTAAAGGCTGATGATTTGGTTTACGATCCTTTTGTTGGAACAGGTAGTCTTTTGGTAGCATGTTCACACTTTGGGGCTTATGTATGTGGGACAGACATCGATTATAACACTATCCATGGAATAGGAAAAGCCAGCAGGAAGAATCAGAAATGGAGAGGACCAGATGAGAACATCCGAGCAAACCTGCGGCAGTATGGGACTGAGAGTCTCTATGTAGACGTCATGGTGTCCGATGCTTCCAAACCAGTTTGGAGAAAAAACGCACAGTTTGATGCCATTGTTACAGATCCTCCATATGGCATTCGTGAGTCCACGAGGAGAACGGGATCTCATAAAGATATCATCAAACCTCCTGAGGATTTGTACTGTGAGGAGATGGTGCCTCTTCACCCCTGTTTGACACTCATCAGCAACTGCGAACAAACTCTGTCCAGCCACACGTCACGAAGACTCATCACCATGGAGAAGACCAAGGAGCCTGAGGATTCGGACAAACTAGCGCACCTTGCTGACTCTCGCTTCACCCCATACCAGGGTCACAACTCATTCAGAGAGAAATACTTCAGTGGTCTCACTAAGAAGAACGGAAAGGACAGCAAAGCCACCCCAAGAAATGAAGATTAAAACATGGGGGAGAAACGGTTTTAAGTTGTATTTTTGTTTTGATACTTTTTAATATTCTTTTTATAACTTAATTGTCACATGTAAATATGTTGTTTCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107039 lncRNA downstream 8708 745672 ~ 745975 (-) True G94073
TU106969 lncRNA downstream 31384 708967 ~ 723299 (-) True G94004
TU106968 lncRNA downstream 31445 708050 ~ 723238 (-) False G94004
TU106982 lncRNA downstream 109803 644673 ~ 644880 (-) True G94017
TU106976 lncRNA downstream 118313 636167 ~ 636370 (-) True G94011
TU107086 lncRNA upstream 27128 797484 ~ 797719 (-) True G94106
TU107053 lncRNA upstream 73729 844085 ~ 846335 (-) True CI01000016_00843272_00857193
TU107117 lncRNA upstream 88412 858768 ~ 862962 (-) True G94137
TU107194 lncRNA upstream 206524 976880 ~ 978159 (-) True G94213
TU107076 lncRNA upstream 213211 983567 ~ 984870 (-) True G94098
CI01000016_00679328_00729780.mRNA mRNA downstream 24717 678792 ~ 729966 (-) False CI01000016_00679328_00729780
CI01000016_00601605_00607255.mRNA mRNA downstream 147428 600622 ~ 607255 (-) True CI01000016_00601605_00607255
CI01000016_00592794_00596916.mRNA mRNA downstream 157581 592130 ~ 597102 (-) True CI01000016_00592794_00596916
CI01000016_00589778_00591095.mRNA mRNA downstream 163389 589672 ~ 591294 (-) True CI01000016_00589778_00591095
CI01000016_00581946_00586945.mRNA mRNA downstream 167686 581866 ~ 586997 (-) True CI01000016_00581946_00586945
CI01000016_00775184_00778097.mRNA mRNA upstream 4302 774658 ~ 778097 (-) True CI01000016_00775184_00778097
CI01000016_00843272_00857193.mRNA mRNA upstream 72794 843150 ~ 857296 (-) False CI01000016_00843272_00857193
CI01000016_01088942_01089316.mRNA mRNA upstream 318196 1088552 ~ 1089339 (-) True CI01000016_01088942_01089316
CI01000016_01134396_01182271.mRNA mRNA upstream 363458 1133814 ~ 1182271 (-) True CI01000016_01134396_01182271
CI01000016_01195747_01197970.mRNA mRNA upstream 425361 1195717 ~ 1199062 (-) True CI01000016_01195747_01197970
TU107853 other upstream 1500480 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 2214904 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 2865251 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 3095405 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 4142352 4912708 ~ 4923404 (-) True G97040

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020129 False 1397 mRNA 0.42 12 NC_007127.7 40043707 ~ 40074142 (+)