RNA id: CI01000016_00843272_00857193.mRNA


Basic Information

Item Value
RNA id CI01000016_00843272_00857193.mRNA
length 1116
RNA type mRNA
GC content 0.48
exon number 7
gene id CI01000016_00843272_00857193
representative False

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 843150 ~ 857296 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAGGCCCTTCTGCTTTCTGGCTACCACAGAGTGAGATGAAAGCGCTTGTGCTTCTACAAAAGACTTATTTTTTTGTGCCTAGCACCACTTTAGCCAGCTAAATGCATCTCATCCCGACGACTAGCATTGGGAAATACAATCTCGGTGCAGAGGGGAAAGTCTGGGCCAGCATTTCAAACAAAGGCACGCTAGCACAAAAAGACGAGAAGGGTAAAACCCTGGGACACTGGGCAGTAGAAGCAAAGACACAAAGCCCAGCAGCGACAGTGCCAATGAGGAACTGGTTCGGACGCCGACGATCAATAATTATTCCCAGACTGGCCCATTTGACCATTACCCATGATGCTCCAGTGTTTGCCATAGTGCTCTACTTTGGTAAGAATTCTGAACCTTTTGAATATGCATGCATTCTCCTTGACAGGCCCTATTTAGCGAGAAATCTGTCAGAATGCTATGGACGCATGAAGTGTGTGAAGCAGAAAATCAGAACATCACAAAACCAGATAACCAAGGTCCCTTACCTTAGTCTGAAGGTAGTGAGGGTAATATCGGTGCAGCGTCGGTTCCCAGAGGAGCTTGTCAGATATCCCAGTCGCACACTTTGTTCCCGTCTGGCGGATGCACAAAGCGGCAATGTAGACAGTCGCTGGATTTGGATCTCTGCGCGCACAGCTGACGGGACTCAAACCCTCCGCAGGAAAGACCAGACCCTAGTGGGTGGGGCTAAGGGCTGGCTGCACCATTCCCAGCCAGGGGAGTGTCTAAAGCAGCCTATCTCTGTTTGTCCTCATGGGAGAGCTGCCGCCCACTGCACGGCTTCACTAGTGCAGAAGGGGAAGACTTACTCTTACTCCCACACTCTGGGGGAGGAGACTGAAGACAACACAGCAAGGAGCAGAGGCCCCCTAATGTATCCGCAGTGCTTTTTTAATAGAAGTGCACATGCAGATATGGCTGTTCATAAGAGACAGTTTCAGGGCGTGACAAATTAGCGCTAAAAAAAAAAAAGCGAGCTTTAAGTGTTTGCAGACTGACGGCAGTAATTATGAGAGCTATAGCATTTTTTTTTGTCCAAAGACTGCAGTAAAGTGAAAGGAATGTGAGACCTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107086 lncRNA downstream 45431 797484 ~ 797719 (-) True G94106
TU107039 lncRNA downstream 97175 745672 ~ 745975 (-) True G94073
TU106969 lncRNA downstream 119851 708967 ~ 723299 (-) True G94004
TU106968 lncRNA downstream 119912 708050 ~ 723238 (-) False G94004
TU106982 lncRNA downstream 198270 644673 ~ 644880 (-) True G94017
TU107117 lncRNA upstream 1472 858768 ~ 862962 (-) True G94137
TU107194 lncRNA upstream 119584 976880 ~ 978159 (-) True G94213
TU107076 lncRNA upstream 126271 983567 ~ 984870 (-) True G94098
TU107060 lncRNA upstream 143128 1000424 ~ 1005716 (-) False G94084
TU107059 lncRNA upstream 143864 1001160 ~ 1005716 (-) False G94084
CI01000016_00775184_00778097.mRNA mRNA downstream 65053 774658 ~ 778097 (-) True CI01000016_00775184_00778097
CI01000016_00754785_00770356.mRNA mRNA downstream 72794 754683 ~ 770356 (-) True CI01000016_00754785_00770356
CI01000016_00679328_00729780.mRNA mRNA downstream 113184 678792 ~ 729966 (-) False CI01000016_00679328_00729780
CI01000016_00601605_00607255.mRNA mRNA downstream 235895 600622 ~ 607255 (-) True CI01000016_00601605_00607255
CI01000016_00592794_00596916.mRNA mRNA downstream 246048 592130 ~ 597102 (-) True CI01000016_00592794_00596916
CI01000016_01088942_01089316.mRNA mRNA upstream 231256 1088552 ~ 1089339 (-) True CI01000016_01088942_01089316
CI01000016_01134396_01182271.mRNA mRNA upstream 276518 1133814 ~ 1182271 (-) True CI01000016_01134396_01182271
CI01000016_01195747_01197970.mRNA mRNA upstream 338421 1195717 ~ 1199062 (-) True CI01000016_01195747_01197970
CI01000016_01199558_01199730.mRNA mRNA upstream 342249 1199545 ~ 1199730 (-) True CI01000016_01199558_01199730
CI01000016_01202843_01213613.mRNA mRNA upstream 343962 1201258 ~ 1213613 (-) True CI01000016_01202843_01213613
TU107853 other upstream 1413540 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 2127964 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 2778311 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 3008465 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 4055412 4912708 ~ 4923404 (-) True G97040

Expression Profile