RNA id: TU107053


Basic Information

Item Value
RNA id TU107053
length 591
lncRNA type sense_over
GC content 0.53
exon number 2
gene id CI01000016_00843272_00857193
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 843150 ~ 857296 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGTGCTCACATGAGGTCTCCATCCTTCACAGGCGAGACCGAATATCTGAAATCTGAAACTCTCTCCCAGTGCCAAAAAACCTCCTCCATCTCCTTTAATATTCTACAGATCAATAATTATTCCCAGACTGGCCCATTTGACCATTACCCATGATGCTCCAGTGTTTGCCATAGTGCTCTACTTTGTCGGTGCAGCGTCGGTTCCCAGAGGAGCTTGTCAGATATCCCAGTCGCACACTTTGTTCCCGTCTGGCGGATGCACAAAGCGGCAATGTAGACAGTCGCTGGATTTGGATCTCTGCGCGCACAGCTGACGGGACTCAAACCCTCCGCAGGAAAGACCAGACGTGAGCCGTGAGGTTACGAGGCACACAGGAAACGGCACAAACTCCAGGCAGACTGCAGTATCCGAAAACTCCAAGTGCAGCACCACTGTTTTTCCTCTGTGATGTTCTTTTCTTTATTACCCGCCTCCCTCGTCTGCCTGCTTTGTTGCGCGCGCGAGAGTGTGTGTGCGAGAGTGAGTGTGAGTGTGTGTGGCTGTGTGAGAGTGTGTGAGTGTGTGTGCGCGCTGCCGGCTGCTCCACACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107086 lncRNA downstream 46366 797484 ~ 797719 (-) True G94106
TU107039 lncRNA downstream 98110 745672 ~ 745975 (-) True G94073
TU106969 lncRNA downstream 120786 708967 ~ 723299 (-) True G94004
TU106968 lncRNA downstream 120847 708050 ~ 723238 (-) False G94004
TU106982 lncRNA downstream 199205 644673 ~ 644880 (-) True G94017
TU107117 lncRNA upstream 12433 858768 ~ 862962 (-) True G94137
TU107194 lncRNA upstream 130545 976880 ~ 978159 (-) True G94213
TU107076 lncRNA upstream 137232 983567 ~ 984870 (-) True G94098
TU107060 lncRNA upstream 154089 1000424 ~ 1005716 (-) False G94084
TU107059 lncRNA upstream 154825 1001160 ~ 1005716 (-) False G94084
CI01000016_00775184_00778097.mRNA mRNA downstream 65988 774658 ~ 778097 (-) True CI01000016_00775184_00778097
CI01000016_00754785_00770356.mRNA mRNA downstream 73729 754683 ~ 770356 (-) True CI01000016_00754785_00770356
CI01000016_00679328_00729780.mRNA mRNA downstream 114119 678792 ~ 729966 (-) False CI01000016_00679328_00729780
CI01000016_00601605_00607255.mRNA mRNA downstream 236830 600622 ~ 607255 (-) True CI01000016_00601605_00607255
CI01000016_00592794_00596916.mRNA mRNA downstream 246983 592130 ~ 597102 (-) True CI01000016_00592794_00596916
CI01000016_01088942_01089316.mRNA mRNA upstream 242217 1088552 ~ 1089339 (-) True CI01000016_01088942_01089316
CI01000016_01134396_01182271.mRNA mRNA upstream 287479 1133814 ~ 1182271 (-) True CI01000016_01134396_01182271
CI01000016_01195747_01197970.mRNA mRNA upstream 349382 1195717 ~ 1199062 (-) True CI01000016_01195747_01197970
CI01000016_01199558_01199730.mRNA mRNA upstream 353210 1199545 ~ 1199730 (-) True CI01000016_01199558_01199730
CI01000016_01202843_01213613.mRNA mRNA upstream 354923 1201258 ~ 1213613 (-) True CI01000016_01202843_01213613
TU107853 other upstream 1424501 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 2138925 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 2789272 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 3019426 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 4066373 4912708 ~ 4923404 (-) True G97040

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021740 True 1143 lncRNA 0.55 3 NC_007127.7 39859725 ~ 39901857 (+)