RNA id: CI01000016_01195747_01197970.mRNA



Basic Information


Item Value
RNA id CI01000016_01195747_01197970.mRNA
length 1494
RNA type mRNA
GC content 0.39
exon number 3
gene id CI01000016_01195747_01197970
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1195717 ~ 1199062 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTCCCACTGACTCACTCAGACTTGACTACGGTAACACCATTATTTTACCGCCATCTTTAACATTTTAAGACATAAAATGATAATGAAACTACCTACTGTGCATCACAGAAATAAATCAAACCGGTAGCTTAGAGTGGCAGTCAGCATGAAACGGTAGTCAATAAATGGGCGGGACTAATAAAAACATGCGCTGTGGACCTAAATAAAAACGTCGTATTTTAAGTCTTCACCGTGTATTTTCTGTGTAATTGCTTTTTAATGTTGAAGTGTAATTATTTACGTTAAAATGATCACCTAGACCACTGCTGAAGAATTTGTCAGCGTCATGTGATAAGTGTTTCTTTTCTCAACGCTGTTTATAATGGACCAATCACAGTCGTTTGTTGGCACGGCATAATCACAATTTTAAAAAAAAAATAGTTTGTCGAAATTTCCATTTGTATAACAAATTATAGCTATTAAACTCTATATATTTAATCGATTATTAGATTATACAAATCTATAGGGCAAAAACACTCTGTGATATGAGCGGGGCTCAATGGAGATTTCGGCTTTCTGAGCCGCCAAGCGCCTCTTGAGGAAATAAATATTGTGGAAATGTTACTAACAAGCCACATTCGCCGCTCAATGTAAGAAATCGTGAAGGCGCGCGCTGATTGGTAATTTATAGACGCTTATTGATGAGGTTTCATGGACGCAAAATTTACACGCCTGGTTCTTGTGTGTTAAGTGTTTGTAAAACATAAAGCACATTTACCGTTTATTAGGCTGATTTTAACTGAAAAACAATGAGTAAAAAGGGTAATGTATCATGGGTGAAGCCAGCCGAACCATCTTTTTTGAAGAAATTTAAGAATGATGTTGGTTATAAAGAAGGGCCGACGGTGGACACTAAAGTAAGCGTTTTTAGTCTCATTAGTCGTGCGTCAAAACATAGTGAGATGCCAACGTAAAAATGCTATCCGGACGCATGTTGTCCATGTAGGCAGCTCACTAGGTTTTCAGACGGCCTCTATTGTATTTATGTTTAGTGTAGGAAATAGAATAGTAAGTAAACGTTGTTGTTGTTGTTGTTGTTGCAGAAGCAGCAGATGCCGCAGTGTGATGATGACAGTGATGGTGACAGTGATCGCGAGGACGAGATGCCGCAGGTCGTGGTCTTAAAAAAGGGAGATCTGAGTGCTGAAGAGGTTATGAAAGTCAAAAAAGATACAAAGGATTCAAACACAGATGAAGAGCCTCCAGCAGATGGAAAGATCGTCTTTAAGAAGCCTGTCAAACGCTCCTCTGATAAATTCAAAGGCATCACGGCCAGCTCTAGCAAGAAGAAGAAAAGCGAGGATGGCGAGAAGAAAGAGTCAAAAGCTGGTGTGAAGGTTTTGTTTTGCAAAACGTTGACACTCAAAATCCCTGATTCTGGGACTTTTGGAGTTGTATTTTATTATACATTGTGTCACATTTAGAGGAAAGAAAAAAATGCATTCTGGAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU107242 lncRNA downstream 63775 1125042 ~ 1131942 (-) False G94256
TU107239 lncRNA downstream 63775 1128797 ~ 1131942 (-) False G94256
TU107241 lncRNA downstream 63775 1128797 ~ 1131942 (-) True G94256
TU107240 lncRNA downstream 69793 1125042 ~ 1125924 (-) False G94256
TU107235 lncRNA downstream 135663 1059288 ~ 1060054 (-) True G94253
TU107299 lncRNA upstream 46284 1245346 ~ 1245597 (-) True G94310
TU107305 lncRNA upstream 64445 1263507 ~ 1263749 (-) True G94316
TU107340 lncRNA upstream 136020 1335082 ~ 1335664 (-) True G94351
TU107394 lncRNA upstream 253113 1452175 ~ 1452402 (-) True G94394
TU107354 lncRNA upstream 364027 1563089 ~ 1563911 (-) True G94364
CI01000016_01134396_01182271.mRNA mRNA downstream 13446 1133814 ~ 1182271 (-) True CI01000016_01134396_01182271
CI01000016_01088942_01089316.mRNA mRNA downstream 106378 1088552 ~ 1089339 (-) True CI01000016_01088942_01089316
CI01000016_00843272_00857193.mRNA mRNA downstream 338421 843150 ~ 857296 (-) False CI01000016_00843272_00857193
CI01000016_00775184_00778097.mRNA mRNA downstream 417620 774658 ~ 778097 (-) True CI01000016_00775184_00778097
CI01000016_00754785_00770356.mRNA mRNA downstream 425361 754683 ~ 770356 (-) True CI01000016_00754785_00770356
CI01000016_01199558_01199730.mRNA mRNA upstream 483 1199545 ~ 1199730 (-) True CI01000016_01199558_01199730
CI01000016_01202843_01213613.mRNA mRNA upstream 2196 1201258 ~ 1213613 (-) True CI01000016_01202843_01213613
CI01000016_01224759_01234682.mRNA mRNA upstream 25074 1224136 ~ 1234682 (-) True CI01000016_01224759_01234682
CI01000016_01341525_01342959.mRNA mRNA upstream 142285 1341347 ~ 1343558 (-) True CI01000016_01341525_01342959
CI01000016_01396291_01399075.mRNA mRNA upstream 195653 1394715 ~ 1400954 (-) True CI01000016_01396291_01399075
TU107853 other upstream 1071774 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 1786198 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 2436545 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 2666699 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 3713646 4912708 ~ 4923404 (-) True G97040

Expression Profile