RNA id: CI01000016_01653014_01654553.mRNA


Basic Information

Item Value
RNA id CI01000016_01653014_01654553.mRNA
length 1278
RNA type mRNA
GC content 0.39
exon number 5
gene id CI01000016_01653014_01654553
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1652387 ~ 1654559 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAACCATGAATTATTTCTCGGAATTCATCGTATGTCTTGTAACTTTCGCTGTGGCGGAGTGTTTAAAGCATGATATTAGCGCTATCACTGGTGAAGATGCCGTGTTGCCATGTGCGGCGAAATCAAAGGACGGTGTCCAGTATCGCTCGGTGATATGGTACAAGGTTGCTGAAGGGCCTTCCCGAACGTTAACTGGTCTTGTAATGAAAAGACTAACTGAAAACAATGGCAAAGTGGAAAAATATAAAGGTGTCGAACGAGAGGTTGAGCTGCTTGAGAGCACAAAGAGCCTTATTCTGTCTAATGTAACTGCAGAAGACAGTGGAATATACAGCTGCTTTATGTCTGCTCCTCTTGGCCATCAGAACCAGGAAGGCGAAGTCGTTCTGAATGTTAATGAGTTTATTACAGCTGAGGAAATGGAATATAATAAAAGTGATAACCATAACACACTTTATGTTATGGCTTTCGCAGTCCTCGGTGTGGCACTCCTGATGTTTTGCATAAGCTACGTATTTACCAGAGACATGTTTACCACAGGTTTGTTTAAGAAGTGTATTCCAAAGCAACAAGAAGCTCTCGAAAGACTCTTTGCATCAAGGCAAGAACTTGATTGTCACCAAGCATGTGGATTGCAAGACTTTACCTGAAGTGTTTGTGTGATGGTAAACAAGAGTTCATAGGGCAGTGCTCAGTAGGACAAAGCTTCGTGCACAGGACACAGATAGTCGATAGAGCTCATGCTGAAGAAGACAACCGGCAGATACACAAGAAGTGGCATGTCACATGCTACTTAACCTACTTGATAAGCTGGTAGATGGTCACTCTACAAAGAGTGAGGAATGCAAGCGCAAAGGTTTCAGCATCATCAACATCTTTTGAAAACTGAATCTTTACATTATGAAACAATCAGTGAGACCAAGAGAAATGTTCTGCATTAGAATTGTGGTTGGTTGCTTGTTTGTGAGTGTGACCACCATGGAAGTGGAGAAGGACTGACCCAAATACAGAGCACGTTTGAATGCTATGCTCTGTGATCAATGTTATTGTCTGGCATGCTTACAGATTTTCTACTAAGTTCTCACAAGACAAATGGTAAATATTGTATTTTTTCAAATGATTTTTGAAATCATGTTTTCAATTCTGTCATTCTTATAGAAAAGCAAAAACTACCTCATATGATAATGGATTTATTTAAAAATTCATTTGTTTTATTTCTATTTTATCTTTATGATATGGAGTTATTGTATGTTAATGCATATTGAATATAGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107450 lncRNA downstream 28385 1623032 ~ 1624002 (-) True G94449
TU107435 lncRNA downstream 84105 1568055 ~ 1568282 (-) True G94434
TU107434 lncRNA downstream 86736 1565320 ~ 1565651 (-) True G94433
TU107354 lncRNA downstream 88476 1563089 ~ 1563911 (-) True G94364
TU107394 lncRNA downstream 199985 1452175 ~ 1452402 (-) True G94394
TU107517 lncRNA upstream 78520 1733079 ~ 1737573 (-) True G94510
TU107462 lncRNA upstream 143070 1797629 ~ 1826281 (-) True G94460
TU107657 lncRNA upstream 417905 2072464 ~ 2078409 (-) True G94634
TU107697 lncRNA upstream 495804 2150363 ~ 2150589 (-) True G94674
TU107788 lncRNA upstream 525695 2180254 ~ 2180460 (-) True G94748
CI01000016_01577710_01581289.mRNA mRNA downstream 70708 1576406 ~ 1581679 (-) True CI01000016_01577710_01581289
CI01000016_01476991_01494147.mRNA mRNA downstream 157393 1476837 ~ 1494994 (-) True CI01000016_01476991_01494147
CI01000016_01396291_01399075.mRNA mRNA downstream 251433 1394715 ~ 1400954 (-) True CI01000016_01396291_01399075
CI01000016_01341525_01342959.mRNA mRNA downstream 308829 1341347 ~ 1343558 (-) True CI01000016_01341525_01342959
CI01000016_01224759_01234682.mRNA mRNA downstream 417705 1224136 ~ 1234682 (-) True CI01000016_01224759_01234682
CI01000016_01659416_01671969.mRNA mRNA upstream 4415 1658974 ~ 1671969 (-) True CI01000016_01659416_01671969
CI01000016_01689633_01693021.mRNA mRNA upstream 34936 1689495 ~ 1693672 (-) True CI01000016_01689633_01693021
CI01000016_01835869_01947822.mRNA mRNA upstream 181186 1835745 ~ 1947842 (-) False CI01000016_01835869_01947822
CI01000016_02120276_02136906.mRNA mRNA upstream 465597 2120156 ~ 2137185 (-) True CI01000016_02120276_02136906
CI01000016_02263634_02265929.mRNA mRNA upstream 608686 2263245 ~ 2265929 (-) True CI01000016_02263634_02265929
TU107853 other upstream 616277 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 1330701 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 1981048 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 2211202 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 3258149 4912708 ~ 4923404 (-) True G97040

Expression Profile