RNA id: CI01000016_02120276_02136906.mRNA



Basic Information


Item Value
RNA id CI01000016_02120276_02136906.mRNA
length 1449
RNA type mRNA
GC content 0.44
exon number 10
gene id CI01000016_02120276_02136906
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2120156 ~ 2137185 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTGTTGAGCTCCATTCAATGAAGGTAGAACAGAGGTTGATTGAGAGTCTACGCCACTGAAGGACATTTAAAAGTCATCGCCCAAGTCCCCTCTACTCCTCAACCTCTGCCTGATGGGACTTAAGAAGTCATTTCAAAGTGCAATTCATGTTTGATGACTTTATTGATTTTCCTATCCCGTCTCCCTTCCTGCCCCCTTCCTCCCAGCGAGGGTCTCTGCAGAGTGAAATGTACCTACAGTTACAGCTTGCTGAAGCTTCAGTTCGCTGCCCCTAAATTATGGCCTTCCGTGCTGAGAACGACACAAGATGCGTAGGGAAAAATAAAGATGCAATTAACCCGAGTAAGAACTCGCAACCACCACCAGGCTCATCATGTTCTAGTTGGCTCTCTTCAAATAGCAGAGCTGTTGACTTCATGTCACCTGGGCGCGTTTCGGGACTGATCCCGCCAATGTTACTAGGTCCCCATCCGGGGATCGATCCCGGGACGTGTTTGTGTTCACGCAGAAGGCACTCTGGCAATTTTACGGGATCAATGCACTGTGTGAAAGGGGCTATACTGATGACTTTTTTTGCAATCCATGTTTGCTCAGGACAAAATGAAGAGAAATACGCACAACTGAGACTAAGAACACACTGTTCCTCCTCTCGTTTCTCTCCAATGGAGAATTTCATTATTCTATGTCCATTCTCCCAGTTCCGTCAGGAATATAGATCTTTATCGGGCAGGAAATGGTTTTGGGTGGAGGATCGAGAGGATTCACTGCACACAAGCACATGCAGTTCCTGTCAGCTGACGACTGGTGGCACTGCATTATCAGCCAAAAGCCTCGGGGGCAGCGTGTGTATCATCTTCAAACAAACGGTTCACCTTTGTAAAAACACTGCGGCCTGCCTGCGGCCTGAAATCCTATTAAATCTCCCTCTCTCTTTCTCCAGCAAGCTGACAGGAGTGTGTGAATATGGAGAGAGTCTGGCTTATTCGGAGGCACAGAGAGAGGCAAAGAAAAACAAAGACTATGACACAACACTGATATCTCGATGTAAAACCACAATTAAGCCTAACTGCAGACGGCATATGCAGCCTATTGGTGTCGGGCGGGCCCTTCCGGCGTTTTCCCCTCTGAAAGACCCTGGTTTGTTTTTGGCAAAGCAACTGTTTAGGAGGATGGAGTATTCACTGTTGGAATACAAATGGTTCTCTCAGGCTTGGACTTTAGAGTTGCTGAGTGATACGGAAGTAGTCGCCTGTGTGACAGTGATTTTAAGGAGAAAAATATTGCATTTAATGTTGTCCATGATTTTGATTAGTGTTGTCATGATCTAAATTTGAAAACAATACCAGAACAAATTCACAGTTCTCAATAGTATAGCTATCAGAAAACTATTGGAACTATTTAACCATTTAAACTATTTGAAAAAAAAAAAAAAAAAAAAAAGTATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU107657 lncRNA downstream 41747 2072464 ~ 2078409 (-) True G94634
TU107462 lncRNA downstream 177846 1797629 ~ 1826281 (-) True G94460
TU107517 lncRNA downstream 382583 1733079 ~ 1737573 (-) True G94510
TU107450 lncRNA downstream 496154 1623032 ~ 1624002 (-) True G94449
TU107435 lncRNA downstream 551874 1568055 ~ 1568282 (-) True G94434
TU107697 lncRNA upstream 13178 2150363 ~ 2150589 (-) True G94674
TU107788 lncRNA upstream 43069 2180254 ~ 2180460 (-) True G94748
TU107791 lncRNA upstream 60080 2197265 ~ 2197495 (-) True G94751
TU107815 lncRNA upstream 105038 2242223 ~ 2249672 (-) True G94768
TU107863 lncRNA upstream 296007 2433192 ~ 2446161 (-) False G94796
CI01000016_01835869_01947822.mRNA mRNA downstream 172314 1835745 ~ 1947842 (-) False CI01000016_01835869_01947822
CI01000016_01689633_01693021.mRNA mRNA downstream 426484 1689495 ~ 1693672 (-) True CI01000016_01689633_01693021
CI01000016_01659416_01671969.mRNA mRNA downstream 448187 1658974 ~ 1671969 (-) True CI01000016_01659416_01671969
CI01000016_01653014_01654553.mRNA mRNA downstream 465597 1652387 ~ 1654559 (-) True CI01000016_01653014_01654553
CI01000016_01577710_01581289.mRNA mRNA downstream 538477 1576406 ~ 1581679 (-) True CI01000016_01577710_01581289
CI01000016_02263634_02265929.mRNA mRNA upstream 126060 2263245 ~ 2265929 (-) True CI01000016_02263634_02265929
CI01000016_02288848_02311105.mRNA mRNA upstream 150112 2287297 ~ 2311105 (-) True CI01000016_02288848_02311105
CI01000016_02328065_02334778.mRNA mRNA upstream 190627 2327812 ~ 2335736 (-) True CI01000016_02328065_02334778
CI01000016_02467451_02477544.mRNA mRNA upstream 330266 2467451 ~ 2477544 (-) True CI01000016_02467451_02477544
CI01000016_02568824_02575674.mRNA mRNA upstream 431425 2568610 ~ 2575674 (-) True CI01000016_02568824_02575674
TU107853 other upstream 133651 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 848075 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 1498422 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 1728576 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 2775523 4912708 ~ 4923404 (-) True G97040

Expression Profile