RNA id: CI01000016_02328065_02334778.mRNA


Basic Information

Item Value
RNA id CI01000016_02328065_02334778.mRNA
length 2162
RNA type mRNA
GC content 0.42
exon number 7
gene id CI01000016_02328065_02334778
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2327812 ~ 2335736 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATAGTGTCTGGATTTTATTCAACACATTGCTGGTGTTTTGCAGATAAACTGTCAAGACCATCATAGACTGGTCTTTTCTGAACTCAATTCATGATTTTAAATTATTGATCACTTAAAATATCTCCCATATGAAAATATTGGCTAAATATGTGCATATATACTTCACTTACATGTACAAAGCACCGATAAATAGGTTAGGAACCAAAAACCTGTACTTTTTCAGAACCAGTTCCATTTTTAAAAGATACTGGAAACGAATGATTTCGAAAAAAAAAAGTTACTGGAAACGAATGAGATTCGGTTTCATTAACGGTTCTCAAACGTGCGTCTTTCCGCCAATGTGGACGGAACATCACACTGCAGTGTTTACTGCAGTACTATTCAGATTCACTGCAAAGCCTCTACTGGATATACAGCACGAAACGAGTGGTCCGATGTCCGATTCACAAACAAACGACTCTTATGAGTCGGTTCTTTTTAGTGCATCAGGCGACCAGTATGTAGCCCCACTACCGAACAAATGACTCTTCTGAACCGATTCTTTTTAGTGTATCAAAAGCATTATGACTCAGAAGGAGAGGTTAACTGACTGAATCAATAACTTTACTGTTTTATGTTGTATTTTATTTTAACATAAATAATTAATTTCAAAATATCCACCGCAAAATGTCCCAGGCAGGCCTGTTGTACTCTCAGCTCTGAATATTATTAAAACCACTGAATTTATATTCATGCAAGAAACTTATTTTCTTATTGTGATGCTGAGATAAACGTTTCATAATACATTGAAATCTTCTGCTAAATGATGAGACGCGTGTAATCAGCCAGTTGGCTAGCGGACAGCAGGGTAGGCCACTAAGCTGTTGTTGTTGTTGCTTAATATAGCATTCTGCACAGGACACAATGTAACATACCAGGGTTATTCTTCATTTTGTACACCTGCTACATGAGAGGTGATGGATCGAGTCACATCATCTGATCGAGTGAACTATGGCGCTGTCCTCGCGCTGGCGGCGATCAGCTTTATGCTGCTGCGAAAATGGATAGCTGGTGGTGTCTGCAAAAGCTGTGCTCGTTTGGATGGAAAAACAGTTGTGATCACTGGTGCCAACACAGGGATTGGCAAGGAAACTGCAAGAGATATGGCTCGTAGAGGGGCTCGGGTAATCATGGCCTGCCGTGACCTGACACGTGCTGAGAGTGCTGCCGAATATATTCGTCGCTCCACAGGAAATGGCAATGTAGTCATCAGACACTTAAATCTAGCCTCTCTCTATTCTGTCCGAGAATTTGCCAAAGAGTTCATAGCCACAGAAGAACGACTGGATATACTCATCAACAATGCAGGTGTGATGATGTGTCCAAAGTGGATCACAGAGGATGGCTTTGAGACACAGCTGGCTGTCAATCACTTGGGACATTTTCTTCTGACCAATCTACTATTAGGAATGCTAAAGAGATCCTCCCCCAGCCGCGTAGTGAATGTGTCCAGTGTTGCACATGTTGGTGGTAAGATTGAATTTGATGACCTTTTCTTTGACAAAAGGCCTTATAGTCCTTTGGTCAGCTATAAACAGAGTAAGCTGGCCAATGTGCTTTTCTCCAAAGAACTTGCACGAAGAACGAAAGGAGTGATTCGAACAGAGCTGAATCGCCATATTCTCTTATGGTACCCCATGCTGAAGACTATACTGTCTTTGCCCAGTATGCTGCTGATGAAAACTCCCTGGCAGGGCGCACAGACCTCCATCTACTGCGCTGTCACCGAAGGCTTAGAGAGGAAGTCTGGCTGCTACTTCAGTGATTGTGCTGAAAAATACCCTGCTCCAGAAGGAAAAGATGATGCAGTGGCAAGAAGGTTGTGGGAGGAAAGTGCTCGACTGGTCGGACTAAACAACCAGCACTGACACTCTTCCTGATTGCAAGCGCTCCCCCTAGTGGTGATACCTGTGACCCAAAACTTTATAGTTAGCAGAACCACAGAAAGGAAGTCATGGCACAGCTAGTGCCAAGGCAAATTACATGATTTGCATCGGGTCGGGAGATGCATATTTGTCAGCATTGTGTGTGTGTGTGATTCTTGGAATAGGATTTTCAAGAAAAAAACATAGATGTGTGGCTGTGTTTTCTTTGAAATTGATCACATTCTTATAAATTAAA

Function

GO:

id name namespace
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107815 lncRNA downstream 78140 2242223 ~ 2249672 (-) True G94768
TU107791 lncRNA downstream 130317 2197265 ~ 2197495 (-) True G94751
TU107788 lncRNA downstream 147352 2180254 ~ 2180460 (-) True G94748
TU107697 lncRNA downstream 177223 2150363 ~ 2150589 (-) True G94674
TU107657 lncRNA downstream 249403 2072464 ~ 2078409 (-) True G94634
TU107863 lncRNA upstream 97456 2433192 ~ 2446161 (-) False G94796
TU107864 lncRNA upstream 97456 2433192 ~ 2446161 (-) False G94796
TU107866 lncRNA upstream 97456 2433192 ~ 2446161 (-) True G94796
TU108201 lncRNA upstream 185985 2521721 ~ 2522003 (-) True G95091
TU108211 lncRNA upstream 192291 2528027 ~ 2537970 (-) True G95100
CI01000016_02288848_02311105.mRNA mRNA downstream 16707 2287297 ~ 2311105 (-) True CI01000016_02288848_02311105
CI01000016_02263634_02265929.mRNA mRNA downstream 61883 2263245 ~ 2265929 (-) True CI01000016_02263634_02265929
CI01000016_02120276_02136906.mRNA mRNA downstream 190627 2120156 ~ 2137185 (-) True CI01000016_02120276_02136906
CI01000016_01835869_01947822.mRNA mRNA downstream 379970 1835745 ~ 1947842 (-) False CI01000016_01835869_01947822
CI01000016_01689633_01693021.mRNA mRNA downstream 634140 1689495 ~ 1693672 (-) True CI01000016_01689633_01693021
CI01000016_02467451_02477544.mRNA mRNA upstream 131715 2467451 ~ 2477544 (-) True CI01000016_02467451_02477544
CI01000016_02568824_02575674.mRNA mRNA upstream 232874 2568610 ~ 2575674 (-) True CI01000016_02568824_02575674
CI01000016_02589744_02622875.mRNA mRNA upstream 253739 2589475 ~ 2622875 (-) True CI01000016_02589744_02622875
CI01000016_02679833_02695963.mRNA mRNA upstream 342802 2678538 ~ 2695963 (-) True CI01000016_02679833_02695963
CI01000016_02802780_02815803.mRNA mRNA upstream 466863 2802599 ~ 2815803 (-) True CI01000016_02802780_02815803
TU107853 other downstream 51537 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 649524 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 1299871 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 1530025 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 2576972 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 2989783 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021331 False 1368 mRNA 0.46 7 NC_007127.7 38109941 ~ 38118003 (-)