RNA id: CI01000016_02679833_02695963.mRNA


Basic Information

Item Value
RNA id CI01000016_02679833_02695963.mRNA
length 2846
RNA type mRNA
GC content 0.46
exon number 12
gene id CI01000016_02679833_02695963
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2678538 ~ 2695963 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAGAGCTGGAGAAGCTGAATCAGTCCACAGATGACATCAATAGGTGTGAAACTGAGCTTGAGCTAGTCTGTAGTCTGATTGTGAGTCAAAAACAGAGGCCGAAGGAGAAATACTTTCTCAAAGGGTCTCAAAATTGCCTGTTTGTCAATTTCTCTGGCAGTCTAGCTCCTGAAGCAAAAACACAGTCTTCCTTACTGAACAAATTAGCAAGTTGTTTCCTGCAGGATGCCAGGCAGAAGTTTCGTTCTGTGCTGGTGGAAGCCACTTTAAAGCTGGACGAGCTGGTGAAGAAGATTGGGAAAGCGGTGGAGGAATCAAAACCGTACTGGGAGGCCAGGCGGGTGGCACGCCAGCTTGTTATCTGCTATGAGCTGGATGGCACAGTAGCATTAACTGTAGATCTGTCACAGGTGGCTGGCTTCATTCAACGAGGCATAAAAGACTTTGCTGAGAGAGAGCGAATGTTTAAACACTCAAATCTCGGTTCCCTTTTCTCAAAGGCCTGTGCTATTCTAAGAGAAGATTATCAGTTTATCTCAGTTAGTGCATTGCAGTTGGAGGGATGCTTGTTAATGCCTTTTATCACATTCACGGCTGTCTGTCCTCTTTCCCTCTCTTTTCTGATTGATTATTTGTCCTGTACCCATCATCACATGGCATATGTGTTGACTCAGCTGGAAGCACAGAGATCCACGCAAGACTTCCAAAGGGCCACGGAGGTACTGCGGGCGGCCAAAGAGACCATCGCCCTGGCTGAACAGAGGCTGTTGGAGGACGACAAGAGGCAGTTTGACTCGGCCTGGCAGGAGATGCTAAATCACGCAACACAGCGAGTGATGGAGGCAGAGCAGATAAAAACACGCAGTGAGCTACTGCACAAGGAGACCGCCGCCAAATACACTGCCGCCATGAGCCGAATGAAACAGCTGGAGAAGAAGCTCAAACGCACCATCAACAAGTCTAAGCCCTACTTTGAAATGAAGGCAAAATATTACTTGCAGCTTGAGCAACTGAAGAAGAATGTGGATGATCTCCAGGCCAAGCTGACGCAGGCTAAAGGGGAATATAAATCAGCCCTCAGGAACCTGGAGATGATCTCAGATGAGATCCATGAGCGCAGACGTTCCTGTGGCATAGGCCCGCGGGAGAGAGGCGTGGGTGCAGAGGGTGATGGTGTCATTGGTGAAGACTTAACTGCCTTCAAAATGGAGTCTGATGGAATATCAATGGCATCTGGGTCCTACGAGGATGAAAACTACAGCACGAGTGCCATCCTGATGTCTCCCATCCTCGGCCCACGCAGCGAATGCAGCGGCGCCTCCTCTCCCGAGTGCGACCTAGAGAGAGGTGACAGAGCAGAAGGTGCAGAGGCCGTACTGGACAACGTTCTCAATAACAATAGCATCAGCAACATCAAAACAACCTTTGGCCTGGATAGCCGTTTCCGCCTGCTATCTCTAAAACTTAGCCGAAATGAAAGCAGGAAAAACATTGGCCGAGACCCCCTGGGTTTGACTCAGCAATCCACAATCCTGCTCGATGGGATGTGACCGCAATGGCTGCTACGTCTGCGTTGATGTATTCATCCACATTCTGTGTGCTATCGAGAGGCACTGGCAGCCACCCATCCTCCACTTCAGTGTCATCCCAGCCCATTTCTCTCACTGTCTAGAATGCTCCACCATCTCTCAGACTGAACTTTCACTCAATCTCACAGGTGTGAGAAAAGCAACCCTTGACACGATGTGCTGAGGAGACGAATCTGCCATTTGAAGGGGCATAGGACTGGGTTAAGCTTTGAAAAGAAGACAAATCTCTCTATAAAATGCATCAGTTGTGAGATTAACATTCCCACATGTTCCAGTCAAGATCTAAAGAGTCTGAAGACACTTAAGGATGACATTAGCACTTGTTAATTAAGATGTACTTGTCTTTAGACTTAAGAAATCCACAAGAGAGTAGTTATGCTGTAGATTTGCCACTTGTTGTCTTTAAAACCTGTGTAACTGTCATGGAAAATATACAGAGTCATTTGTGTGGCAGTATAATGTTACAACCATTTGAGTTAATGTATATCTAGGACATCTGCACATGAACAGACTCACCTGCATGTCCTTCATAAACTCTTAAAAAAGGATGCAAAATCTTCTGAGGAACTTCTGTGCTGCATTGTGACTCATGAGGAAGTGAAGCCAGCCAGCTGCAGGTCACCTTCTCAATGTCATCCAGAGACCTGCAGCAGATACAAGCTGATCCGTACAGGTCACTTTCACCTTCCTTCACAAGCCAAAAGCGTGAGCTTCCCTACATGGGTGGACAGTGTGCATGCTGCCCCATTTTTCTCTCTACATAAAGAATGATCATCGTTTTCAATATAAAAAGAGCAATAGAAAGAGATTCACAATGGCTTTGTGGAAGACTGGTTCAGAAAGTAGCATAAACAAAGCTGGAGCTACTGTACTTGCACTGTTCTGAACGGGGGCAGAAGGGTTATGGGAATCATTTGATGGGTCTCGGTGGGGGACATACAGCACTGATGAAGTAGAAAATTACTGAATGCTCCATCCAGCTTGTTGTGTGTTGTGCAGTAGCCACTGATTTCGAAACAGATGGCACAGCTTCAGGTCTAGTCGTTAGGGTGTGTTTTTTTTTTTTTTTTTTGTGTGACCTTGTGTCTCATCTTTTTTTTGCCTTCTCAAATGTTCTCCTCCCATTTGTTCTGTCTGTTGCAGTTTTGAGAACCGATGGTAAGAAAAGAAACCTTGTATAAGTATTTAAGTGATTAATGGCGTTTAGTCTTTCGTTGTTTACAAAGCTTGTGTAATTGTTTTCAGACTTAAATAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108232 lncRNA downstream 27430 2650907 ~ 2651108 (-) True G95121
TU108171 lncRNA downstream 96818 2581258 ~ 2581720 (-) True G95061
TU108214 lncRNA downstream 136320 2541973 ~ 2542218 (-) True G95103
TU108213 lncRNA downstream 136736 2541583 ~ 2541802 (-) True G95102
TU108211 lncRNA downstream 140568 2528027 ~ 2537970 (-) True G95100
TU108243 lncRNA upstream 9507 2705470 ~ 2707051 (-) True G95132
TU108149 lncRNA upstream 24163 2720126 ~ 2726237 (-) True G95044
TU108248 lncRNA upstream 37785 2733748 ~ 2734245 (-) True G95136
TU108250 lncRNA upstream 60908 2756871 ~ 2757185 (-) True G95138
TU108251 lncRNA upstream 62564 2758527 ~ 2758740 (-) True G95139
CI01000016_02589744_02622875.mRNA mRNA downstream 55663 2589475 ~ 2622875 (-) True CI01000016_02589744_02622875
CI01000016_02568824_02575674.mRNA mRNA downstream 102864 2568610 ~ 2575674 (-) True CI01000016_02568824_02575674
CI01000016_02467451_02477544.mRNA mRNA downstream 200994 2467451 ~ 2477544 (-) True CI01000016_02467451_02477544
CI01000016_02328065_02334778.mRNA mRNA downstream 342802 2327812 ~ 2335736 (-) True CI01000016_02328065_02334778
CI01000016_02288848_02311105.mRNA mRNA downstream 367433 2287297 ~ 2311105 (-) True CI01000016_02288848_02311105
CI01000016_02802780_02815803.mRNA mRNA upstream 106636 2802599 ~ 2815803 (-) True CI01000016_02802780_02815803
CI01000016_02817855_02829699.mRNA mRNA upstream 121892 2817855 ~ 2830457 (-) True CI01000016_02817855_02829699
CI01000016_02884294_02912568.mRNA mRNA upstream 186883 2882846 ~ 2912568 (-) True CI01000016_02884294_02912568
CI01000016_02936606_02957342.mRNA mRNA upstream 240146 2936109 ~ 2957875 (-) True CI01000016_02936606_02957342
CI01000016_02991852_02994428.mRNA mRNA upstream 295257 2991220 ~ 2994428 (-) True CI01000016_02991852_02994428
TU107853 other downstream 402263 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 289297 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 939644 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 1169798 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 2216745 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 2629556 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020067 False 3668 mRNA 0.45 10 NC_007127.7 36126310 ~ 36163508 (+)
bowfin (Amia calva) AMCG00002506 True 3370 mRNA 0.49 8 CM030136.1 17107399 ~ 17136520 (+)