RNA id: CI01000016_02802780_02815803.mRNA


Basic Information

Item Value
RNA id CI01000016_02802780_02815803.mRNA
length 1512
RNA type mRNA
GC content 0.46
exon number 12
gene id CI01000016_02802780_02815803
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2802599 ~ 2815803 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGTGCTTGTGCTTCTAGACTTTGAGGCGACGATGCCAGATGAGTTAACAGTGTGTGTAGGGGATGTGGTAAAGAACGTCTCAAAGGCCAAAGAAGAAGGATGGCTGGAGGGAGATCTGAGAGGAAAAAGAGGCATATTCCCTGGCAACTTCGCCAAGGAAGTGCCGGTTTACTTAATAGGGGACAGCAACAGAGAGCCAAGAAGCATGAGGACATCGAAGAAACCAAAGGTACAGACGAGGAAATGCGAGGTGGCTTTTCCCTACGCTGCCGTGCATGAGGACGAGCTGGAGCTGGTTGTCGGGGAGACCATCGAGATTGTCAGAGAAATTGAAGATGGGTGGTGGATGGGGAAAAAAAATAACCAAATAGGAGCCTTCCCATCAAATTTTGTAAAGGAAATTTTTGTCCCTTCAAAAGTAAAAGAATGTTGTCGGGTGATGTTCGACTACACGGCTGTTTCCGAAGACGAGTTGAACCTGAAGAAGGGAGACGTCATAACAGTTATCAACAAGTCCACTGAGGACGATGGCTGGTGGGAGGGGGAACTGAACGGACACAGGGGCATTTTTCCTGATAACTTCGTCATGGTGATCCCAGCGGATGCTCTTCATACTGGGAATGCAGGCCAGACACCGGTGAGAAGTGGCTCTCAGAACCGTGCAGGGAATCCGATGCCAGTGATGGACCAGAACAGCTCTGATACAAATCCAAAGACGGAGACTAAAAGTGAGAAACCAGACACTAAAGACTTTCGAAGTGACCCGCCTGGTAAAATCAAGTTGCCTGGTCTACACAAACCGCTTGTTCCACCACCACCCGTCAAAGAGAAGCCCATAAAACTACCACCAAAAAATGTTGAAGAGCCACAACTTGTCTCACCGAAACAACAGCCCCCTGCCTCACCAGTACAGAAAGAGGTTAAAGACAATAAGGACGTTAAAGATAAGACCCCTGACCAGTTTGACGGTGTAGACGTGTCCTCAGAGAAACTGAGCCATCCCACGGCCAACAGAGCCAAACCTCCACAGAGAAGACCTCCAACAGCCCTCGCCACTGCCATACAAGTTACAGAACCTCAGTCAGCTCCTCCTGCCAAGACAGAACAGGTAACTAAGAGCACTTCACCACCCAAGACACAGACTGAAAGCAAAGCTGTGGTTCAGGAGGGGACGGCATCACTGGCCTCTGTGCTGACAGAACTCAAAGATCTCCGCATGTCACTGGATCTCCTCAAAGCACAGCATGAGAGAGACATAAAAGAACTTAAAGATGAACTGAAGGTCGAAACGGAAAAACGGATGAGATTACAGGTGAGTGGTGAGATTTAAGTCTATTCTGTGGAGATAAAAAAAGTGTCATATTTAAAACAAACTTGTAAAAGAGGAAAAAATAGTGTTGTTGTTTTTTTTTGTTGTTGTTTTTTTTTACATCAGAGTTTCTCATTCAATTATACTGTATCGATGCTGTTTCGGTTAAAAAAAAAAAAATAAATAAATCCAGTTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108266 lncRNA downstream 26733 2775445 ~ 2775866 (-) True G95154
TU108265 lncRNA downstream 27570 2774594 ~ 2775029 (-) True G95153
TU108264 lncRNA downstream 28881 2773510 ~ 2773718 (-) True G95152
TU108263 lncRNA downstream 29096 2773258 ~ 2773503 (-) True G95151
TU108262 lncRNA downstream 29882 2772502 ~ 2772717 (-) True G95150
TU108269 lncRNA upstream 22452 2838255 ~ 2838520 (-) True G95157
TU108270 lncRNA upstream 23667 2839470 ~ 2839694 (-) True G95158
TU108273 lncRNA upstream 32876 2848679 ~ 2848903 (-) True G95161
TU108278 lncRNA upstream 48966 2864769 ~ 2865131 (-) True G95166
TU108284 lncRNA upstream 61728 2877531 ~ 2877739 (-) True G95172
CI01000016_02679833_02695963.mRNA mRNA downstream 106636 2678538 ~ 2695963 (-) True CI01000016_02679833_02695963
CI01000016_02589744_02622875.mRNA mRNA downstream 179724 2589475 ~ 2622875 (-) True CI01000016_02589744_02622875
CI01000016_02568824_02575674.mRNA mRNA downstream 226925 2568610 ~ 2575674 (-) True CI01000016_02568824_02575674
CI01000016_02467451_02477544.mRNA mRNA downstream 325055 2467451 ~ 2477544 (-) True CI01000016_02467451_02477544
CI01000016_02328065_02334778.mRNA mRNA downstream 466863 2327812 ~ 2335736 (-) True CI01000016_02328065_02334778
CI01000016_02817855_02829699.mRNA mRNA upstream 2052 2817855 ~ 2830457 (-) True CI01000016_02817855_02829699
CI01000016_02884294_02912568.mRNA mRNA upstream 67043 2882846 ~ 2912568 (-) True CI01000016_02884294_02912568
CI01000016_02936606_02957342.mRNA mRNA upstream 120306 2936109 ~ 2957875 (-) True CI01000016_02936606_02957342
CI01000016_02991852_02994428.mRNA mRNA upstream 175417 2991220 ~ 2994428 (-) True CI01000016_02991852_02994428
CI01000016_03060171_03060612.mRNA mRNA upstream 243740 3059543 ~ 3060612 (-) True CI01000016_03060171_03060612
TU107853 other downstream 526324 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 169457 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 819804 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 1049958 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 2096905 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 2509716 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020064 False 751 mRNA 0.50 7 NC_007127.7 35918463 ~ 35937709 (+)