RNA id: CI01000016_03082653_03084658.mRNA


Basic Information

Item Value
RNA id CI01000016_03082653_03084658.mRNA
length 689
RNA type mRNA
GC content 0.47
exon number 2
gene id CI01000016_03082653_03084658
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3082386 ~ 3084658 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGATGGGTGTGGACATACAGTCCTCAGTCCCACCAGTGGCACACTGACCTCGCTGAACTTCCCGGGAACCTACCCTAACCACACCCGGTGTGAGTGGAGCCTAAGGGTAGCGAAGGGCCAGACGCTGCTCTTGACCTTTGGGGACTTTGATTTGGAGTGGAGCCAAGACTGCATATCTGGCTCTCTTACCATCACAGACACCAGTGGAGCCACTAGAGTGGGTCCTCTGTGTGGGCAGTTGTCCACCACAAATAGGAATATATCTGTGAGTACTAATGAAGTAACAGTGCGTTTCATCTCTGGCACTCACCGTTCAGGACGGGGCTTTGTCCTTTCCTATTCAACCAATCAGCACTCAGGTAATGGCTCGTGTCCTGCAACACAACACTTCCCGCTCCATCCCACATCACCTAAACAGTAAACAAAAAAGGAATCCTTATCTCTCAACAAAATAAGAGCTAATAGCGTACACTATGTGGCTAAATGGATCTTTTTGCTCTGAACTTGTTGTATATGATCAGAGTAAACACACCAGGGACTGTTTGTACAGCTTACTCAGTAAACAGCACTTCATCTGACTCTGGGAGTGGAAGTAGTTCCCATCCTAATCTCAACTACTGTTTACACTTGTTTCCAACATCATATGTAAACTGCTTTCCTGGAGGTTGTGCGCAGATCGCTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108308 lncRNA downstream 31660 3049891 ~ 3050726 (-) True G95191
TU108316 lncRNA downstream 38520 3043667 ~ 3043866 (-) True G95199
TU108293 lncRNA downstream 63316 3018794 ~ 3019070 (-) True G95181
TU108284 lncRNA downstream 204647 2877531 ~ 2877739 (-) True G95172
TU108278 lncRNA downstream 217255 2864769 ~ 2865131 (-) True G95166
TU108320 lncRNA upstream 6707 3091365 ~ 3091751 (-) True G95203
TU108327 lncRNA upstream 21102 3105760 ~ 3106448 (-) True G95210
TU108429 lncRNA upstream 237422 3322080 ~ 3322366 (-) True CI01000016_03322103_03326683
TU108430 lncRNA upstream 239709 3324367 ~ 3324682 (-) True G95313
TU108432 lncRNA upstream 241254 3325912 ~ 3326175 (-) True G95315
CI01000016_03072793_03080040.mRNA mRNA downstream 2346 3072728 ~ 3080040 (-) True CI01000016_03072793_03080040
CI01000016_03064633_03068201.mRNA mRNA downstream 13294 3064562 ~ 3069092 (-) True CI01000016_03064633_03068201
CI01000016_03062846_03063013.mRNA mRNA downstream 19114 3062846 ~ 3063272 (-) True CI01000016_03062846_03063013
CI01000016_03060171_03060612.mRNA mRNA downstream 21774 3059543 ~ 3060612 (-) True CI01000016_03060171_03060612
CI01000016_02991852_02994428.mRNA mRNA downstream 87958 2991220 ~ 2994428 (-) True CI01000016_02991852_02994428
CI01000016_03322103_03326683.mRNA mRNA upstream 237345 3322003 ~ 3330762 (-) False CI01000016_03322103_03326683
CI01000016_03555967_03558776.mRNA mRNA upstream 470642 3555300 ~ 3559186 (-) True CI01000016_03555967_03558776
CI01000016_03647744_03675574.mRNA mRNA upstream 562995 3647653 ~ 3675585 (-) False CI01000016_03647744_03675574
CI01000016_03719404_03722988.mRNA mRNA upstream 634509 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_03834829_03843163.mRNA mRNA upstream 749842 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
TU108180 other downstream 96745 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 806111 2270836 ~ 2276275 (-) True G94786
TU109910 other upstream 550949 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 781103 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 1828050 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 2240861 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 2327601 5415682 ~ 5418217 (-) True G97020

Expression Profile