RNA id: CI01000016_03322103_03326683.mRNA



Basic Information


Item Value
RNA id CI01000016_03322103_03326683.mRNA
length 4776
RNA type mRNA
GC content 0.37
exon number 4
gene id CI01000016_03322103_03326683
representative False

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3322003 ~ 3330762 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGATGAAATGCCTCACTAAAGTTCACATTCATTTGTAGATAATGATGCTTGGCTGCAGTTTTAAGTAAAAGGCGGGCCAGACATTATTCACCAAGAATTACTCTGTCAGGCTCTATGACAGAGAAATAAAAGAAATATCATCAGTCCCACCTGTATTGATGACCTTCTGTCACTGTGTTGCATATAGACAGTTTCAATTGCACTGAACACAATGAAATGAGGTAATATTGCTGGACATTGATCATATGTGCATTTGACTCTATTCTAAATTCATGAATGCTTGCTAGAGTGCAAGATGAATAATTTTCAGAGAGAAAATTGTAAAAGCCAACCCATCAAAAGTTTTTCTATTTTCTCAAAGTTTTGCCTTTAATGACAGGTGGAAACTTTCTGAAGTTCTGCCCATGCTAAAGGAGATTTCTGTTTATATAGATCTCTCCTATCCAGACATATTTCTTTATAATAAAGCATATGAATAACATTTTGTAACATTTAACTATTCGCAAGCTATTTCACATTGGTGCATTTATTAATTTAGCAGATGCTTTTATCCGAAGAGAATTACAAATGAGCAAAAGCAAGTAAACCAAAGGAGACACTAACAATAGGGTGATTCAGATTTCCATTTTAGCCAGAAAAATATGAGCTAGTACAGAGGTCAACAAAGCAAAAATAAAACAGAAGAGAGTAGATGTCATAATGGGCTTTGTACAAGGAGAATATTAAGTGCATGAATGGTTTTTTGATCAAGTGCCTGCAGAGGATTTTTTAGATCATATTATGTGCAGTCATAATCATCAGGGACAAATAAGAGTTGGTAAACAAGCTCAACTTTTTGTTGATCAATAAATAATTATTTTGGTAATCATTCATTCACATCCGGTTGGAAAACCAGCATATTGTTTTAGTAGTTGGTAAAACATTCAATGAATATGACATTTAAAAACATATACACTATAGTACAGGTCAGACACATGGATTGTCTTAAGAATGGATTGCTGAATCTCCTGTCTGCACAACAAATTTACCTTTGGGTACTAATAAAGATACCTTGACCTTGACCTTTAAAACTTAAAGGGGACCTATTATGCCCCTTTTTACAAGATGTAATAAAAGTCTCTGGTGACCCCAGAATGTGTCTGTGAAGTTTCAGCTCAAAATTTCCCACAGATCATTTATTATAGCATGTCCTATTTTCACCTATTTAGCCTTTACAGCTTGTCCTTTATATACTATGTTAACAACAAAACTGGAGAATCTCACGCAGCCAAAATGTCAGAAATTGTCAGTAGCGGTGTTCGGCCTGATATGCTTGAACCAGAGTCGAACACAGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGAATGCAACAGGACATTTCTAAATGGTTGGTGGATAAATTTATGTAGCTGTTGTGGAGTTAACTTTATTCAACTTATCGATTAGAGAATATATGCTGCATGGAGATAGAAAAGGCATAGTTTTGTTTAATTATGGTTATAATTTATATATTCATCTTTAGCCACATTAGCCACACAAAATGCTAACAAGCACATTCAAAATCACGATTTGGAAACATTCACAAAATATTGTTCTGATATAAAGTTTGAGCACAAACAGTTGGTATCGACCCCTTTTGTGCAAATACAGCGTTGAACTGACCCTTGTTTGCGAAGCAGTGCAGTGTAAAATGATTTGCGCAAACATATGAGACTTTACCTAATTTCCTAGGCCCATTTCCTTCATAAATGAAATTCATCGACCGTGTCCTCAGTGGCTCAGTTGCTGGAAGTCTACGGAGACGCTCATGTTCATTGGTACATCCAAAAACAGAACATTTGTAATGTGGACACACATCAGTGTTCAAACACCATGTAAAAGTGTTTGCATAATAGGTCCCCTTTAAGTCACAAATTTTTACCAAGGTATATATAGTAATAAAGTAATATAGTAAAAGTAGTAATATTGTTAAATATTATTACTATTTAAAATAATGTTTCTATCTTAACGTATTTTACTTTTTCCTGTGACAGTAAAGCTCTATTTTTACCGGCAATTACTCCAGTTTTCAGTTTCGAATGTTTCATTCTGTCAGAAATCATTGATTTCTGACAGAAAATCATCAGCTGATTTTTTTTAATTATTATTATTAGTTGAAGGGGGAAAAATTATACACACACACATTTTACACACACACACACACACACACACACACACATTATATATATATATATTATATATATATATATACAGACGTGGACAAAATTGTTGGCACCCTTGATAAATATGATCAAAGATGATTGTAACAAATAAATCTGCATTGTTTATCCTTTTGATCTTTAATTCATAAAATTAGCAAAAATCTAACCTTTCATTGAAGGAAAAGAATTGAAAGTGGGGGGAAAATCACATTATGAAATAAATGTTTTTCTCCAAAACACGTTGGCCACAATTATTGGCACCCTTTTATTCAATACTTTTTGCAACCTCCTTTTGCCAAGATAACAGCTCTGAGTCTTCACCTATAATGCCTGATGAGTTTGGACAACACCTGACAAGAGATCAGAGACCATTCCTTCATGCAGAATCTCTCCAGATCCTTCAGATTCCCAGCTCCATGTTAGTGCTTCTTCTCTTCAGTTCACTCCACTCATTTTTTTTAGGGTTCAGGTCAGGGGACTGGGACGGCCATGTCAAAAGCTTCATTTTGTGCTCAGTGACACATTTTTGTGTTGGTTTTGATGTTTGTTTTAGATCATTGTCCTGATGGAAGATCCAACCACTGCCCATTATTGGATTTCTAGCAGAAGTGGTCAGGTTTTGATTTTTTATCTGTTGGTATTTGATAGAATCCATGATGCCATGTGTCTGATCAAGATGTCCAGGACCTCCAGCAGAAAAATAGGTCCACAACATTAAAGATCCAGCAGTATATTTAACCGTGGGCATGGGATACTTTTTATCCATGTGTGCACCAAACCCATCTGGTGGGTTTGCTGCCAAAAAGCTCTTTTTTTTTTGTTTCATCTGACCATAGAAGTCCCGTTTGAAGTTCCAGTCTTGTCTAACAGCTGAATATGCTGGAGATTGTTTCTGGATGAGAGCAGAGGATTTTTCTTGAAACCCTCCCAGACAACTTGTGGGGATGTAGGTGCTGTTTGATCATTTTTTTTAGGCTTTCTGAGACTCAAGACTCAACTAATCTCTGCAATTCTCCAGCTGTGATCTTTGGAAAGTCTTTGTCCACTCAAACTTTCCTCCTCACCGCCCATTAGGACGATTTAGACACACGTCCTCTTCCAGGCAGATTTGTAACATCTTTAGTTGACTGGAACTTCTTAATTATTGCCCTGATAGTGGAAATGGGGATTTTCAATGCTTTAGCTATTTTCTTACAGCCACTTTCTATTTTGTGAAGCTCAACAATCTTTTGCTGCACATCAGAACTATATTCTTTGGTTTTACTCATTGTGATGAATGATTAAGGGAATTTGGCCTTTGTGTTTACACATATTTGTACTCCTGTGGAACAGGAAGTCATGGCTGGACAATTTCATGCTCCTAGTCACCCTGGTGTGATAAAAAAAAAATGTAAATATGAATGGGAATATACTTCAGAGATATTTTACTCATAAAAAATTCTAGGGGTGCCAATAATTGTGGCCACTGTGTATTGGAGGAAAACATTTATTTCATAATGTGATTTTCCCCCCACTTTCAATTCTTTTCCTTCAATGAAAGGTTAGATTTTTGCTAATTTTATGAATTAAAGATCAAAAGGATAAACAATGCAGATTTATTTTTACAGTCATCTTTGATCATTTTTATCAAGGGTACCAACAATTTTGTCCACGTCTGTATATATAAATGCATCAGCCATTCTTTCCTGAAAAAAAAAATCTGCTTTTTTTGCATTAACAGCAAAAGCCTCACTCGATAAACAGAGCAGTGTATCTCACACAGATAAGCTGAGGACAAACAGATGGTGCGGACCCGTGCCTCATACAGCGAGCCATCGCTCTGTAACAGGTTGTGGAGATTCACGGGGTGGAGGGAAGATAAAGAAATGGAGGAATGGAACTCATCCATGTGTCCACTGCACCTGGCTATCTGCCTCCAAGCTATGTGTACTCTATCCTAAGCGCTGAGCTGGAACAACAGGCCGCTCTACCACCTCCAGGGAGCCCTGCACGTCCATCTGTGCTACAGGTTGCAATTGGCTGCATGGGATTCAGCTTCTTCCCATTTAACACCGGCTCGCTTCAAGTCCTCTTTGAATGCACTCTACCAGGTCTTCTTCAGCCTTCCTTGCTTGCAATTTTTGCTTGGAGAAAGCCTGCGGTCTGCAGCCACCTCACATCCACAGCAGGAAATAGGGGGAATACAAAAAAGGAGGAAGTGAGAGAGGTAGAGATGGGCGCAGGAGAGACTGAGTACAAAAATAGACATTACAGAGATGGAAAGACAGTGATAAGAACCACCGAATGGAGGAAAGGATGGAAAGGCAGACAGATGTGGTCTAAAAGGGGATGTGCCCAAGAACAATCACAGCTCTCACTTCTCTCCCAGACTGCAAGATTACTTATTAATTATGGACTGCCTGAGTGCCTAGTAATGGGTTTTCAACAATTGCACTGTGTACCCTGTTGCAAATGCCATGACTTCTCATAAACACTAGATTTACAATAAGCAAGGGATAAGATACAGCCGGCCAGTCATTATCACAAAATAAACCCCGAAAGAATGACCAAACAAATCAGTGAACATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108327 lncRNA downstream 215555 3105760 ~ 3106448 (-) True G95210
TU108320 lncRNA downstream 230252 3091365 ~ 3091751 (-) True G95203
TU108308 lncRNA downstream 271277 3049891 ~ 3050726 (-) True G95191
TU108316 lncRNA downstream 278137 3043667 ~ 3043866 (-) True G95199
TU108293 lncRNA downstream 302933 3018794 ~ 3019070 (-) True G95181
TU108502 lncRNA upstream 67420 3398182 ~ 3400957 (-) False G95376
TU108500 lncRNA upstream 68768 3399530 ~ 3404860 (-) True G95376
TU108506 lncRNA upstream 75670 3406432 ~ 3406702 (-) True G95380
TU108513 lncRNA upstream 80477 3411239 ~ 3411521 (-) True G95387
TU109836 lncRNA upstream 105448 3436210 ~ 3437197 (-) True G96569
CI01000016_03082653_03084658.mRNA mRNA downstream 237345 3082386 ~ 3084658 (-) True CI01000016_03082653_03084658
CI01000016_03072793_03080040.mRNA mRNA downstream 241963 3072728 ~ 3080040 (-) True CI01000016_03072793_03080040
CI01000016_03064633_03068201.mRNA mRNA downstream 252911 3064562 ~ 3069092 (-) True CI01000016_03064633_03068201
CI01000016_03062846_03063013.mRNA mRNA downstream 258731 3062846 ~ 3063272 (-) True CI01000016_03062846_03063013
CI01000016_03060171_03060612.mRNA mRNA downstream 261391 3059543 ~ 3060612 (-) True CI01000016_03060171_03060612
CI01000016_03555967_03558776.mRNA mRNA upstream 224538 3555300 ~ 3559186 (-) True CI01000016_03555967_03558776
CI01000016_03647744_03675574.mRNA mRNA upstream 316891 3647653 ~ 3675585 (-) False CI01000016_03647744_03675574
CI01000016_03719404_03722988.mRNA mRNA upstream 388405 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_03834829_03843163.mRNA mRNA upstream 503738 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
CI01000016_03881771_03883341.mRNA mRNA upstream 549731 3880493 ~ 3883466 (-) True CI01000016_03881771_03883341
TU108180 other downstream 336362 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1045728 2270836 ~ 2276275 (-) True G94786
TU109910 other upstream 304845 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 534999 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 1581946 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1994757 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 2081497 5415682 ~ 5418217 (-) True G97020

Expression Profile