RNA id: CI01000016_03555967_03558776.mRNA


Basic Information

Item Value
RNA id CI01000016_03555967_03558776.mRNA
length 1836
RNA type mRNA
GC content 0.42
exon number 7
gene id CI01000016_03555967_03558776
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3555300 ~ 3559186 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAACAAACTTTTTGGGAACTTTTTTTAAACAGCAAACATGTATTTTGGCTGTTATAGCCTAATGTATTGCAGCAATGGTGGCATATTTAATTGCAGTTTATTTTGAAGTATGCAATAATTTATGCAAGGATAGTTTTGCTGACCTCATCATGACCTGAGGGCATTTTTGAGAAACCCTGAACTGATGTTGCGGTATTCATTCCAAACCACAAGGAGGCGTCAAAGATGAGTAGACGGAAGAGTTTTTCCATGAAAATCATGCGACGAAGAGACTGCAGGAGATGTCAACAAAAACTCCCCTGAAAATGCCGCTGTCAACCTGAATAATAACGAGCTGAATTTTACAACTGACTGCCAGTATCGATCAATTATATCTTCCTTTTATGAGCGTTTAACTAAATTCTCACAATGGCAGAAGGAAACACTCTTTCCGGTGTAAATGTTGTACTTGTTATGGCCTACGGAAGCCTGGTGTTTGTGCTGCTGTTCATCTTTGTGAAAAGGCAGATAATGCGCTTTGCTATGAAGTCTCGCAGAGGACCGCACGTCCCGCTGGGTCATAATGCACCGAAGGACCTTAAAGAAGAGATTGACTCCCGTTTGTCCAAAGTGAATGACATTCGCTATGAGCCACATCTGCTCTCTAAAGATGACGATCGACTAAAGCATCAAGGCCAGAATGGTTGTTATAATTATCTCTTCAGAATGCAAGCATTGGATGCCATCAGAGACTCTGATCTCCCATTTCACGAGTTGTGTCGCAGTGCCAGTGCTCTGACCGGGCGGCGCTACAGGAAGTGGCTGCTGGACCTGCGAAACTCTCATTCTCTGCTCAAGAGTCACGGTGCGCTCCTAGATCGCTTAGTGGAGGGCTACGACAGCGCTCGCCATGGGACCGGGATGTTTGGCGAGGCAGAGTTTGTGAAGTATAAGGAAGATCTGGCTGAACTGGCTGCTGTTGTCAAGTCCTACTCCAGCAGCACCAGTCTAAACCAGCAGCACCAGTCAGCAGCTAAAGATCTGACCAGCTCCCCCGGCCCCTCATCTGCCTCCACCATTCAGGTTACTTACCTGCCCTCCACTGGACAGCGCAGCAAGAGGCCCAAACACTTCCTGGAGCTCAAAAATTTTAAAGACAACTATAATACGCTAGAGAGCACACTTTAGAGGATGAAACCCTTTTAAGGAACTGTGTAGATTTAACTCAAACTGTGAAACAGAAGTGTCGCTCTACACAGGAAAATCTTTCGTGTAGAAATGACCACAGTGGGAGATGCAGTAAAACCTCAAATCACATTGAGAATGTGAGAATGACTTAAGATAGAACAAAATCTATGGGATAAAAGTCATTGTGAGAGCAATGCAAGAATGTTACATTTCTGATTTTATTGTTGTCCTGCCAGAACTCACACCATTTTCTTATTTTAAAGGTCATAGCTACTGTTTACCCTTTTCTTTTTAACTGGAATAACTGTTCTGGCACAAACGTGGATTAAAAACAGCTGTACGGACATTCATTCTTACACCTGTTTTATATTAAAACAACCTTGAGGTTTCCAAAAAAGATCCTGTGTCAGAGAAGACAAGGCTGGATATCATTCTAACAGAAACTGGGAGAGACAAATATTCTTTTCTGTGCTACTGATCAGCTTATTGTCCTTATTTTTTACGTGCAGTTGTAATTTTTAATTAGTTCATGTTGGTATAAGGAGGAACAAAGTGCTTTGAGACATTAATTGATATGGTTGTTGTCATGGTAATGTAGATAAAGAGCTATGAGAAGCTGTCTGTGTTGACTTTCACTGTATTATAAAGTCTTATCAGATCTAATAAA

Function

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109882 lncRNA downstream 657 3549415 ~ 3554643 (-) False G96605
TU109881 lncRNA downstream 657 3551387 ~ 3554643 (-) True G96605
TU109887 lncRNA downstream 9965 3545119 ~ 3545335 (-) True G96610
TU109886 lncRNA downstream 11145 3543873 ~ 3544155 (-) True G96609
TU109883 lncRNA downstream 15273 3539786 ~ 3540027 (-) True G96606
TU109919 lncRNA upstream 3668 3562854 ~ 3563738 (-) True G96637
TU109926 lncRNA upstream 22033 3581219 ~ 3581429 (-) True G96644
TU109949 lncRNA upstream 49150 3608336 ~ 3608877 (-) False G96655
TU109948 lncRNA upstream 49384 3608570 ~ 3608877 (-) True G96655
TU109893 lncRNA upstream 64651 3623837 ~ 3626004 (-) True G96614
CI01000016_03322103_03326683.mRNA mRNA downstream 224538 3322003 ~ 3330762 (-) False CI01000016_03322103_03326683
CI01000016_03082653_03084658.mRNA mRNA downstream 470642 3082386 ~ 3084658 (-) True CI01000016_03082653_03084658
CI01000016_03072793_03080040.mRNA mRNA downstream 475260 3072728 ~ 3080040 (-) True CI01000016_03072793_03080040
CI01000016_03064633_03068201.mRNA mRNA downstream 486208 3064562 ~ 3069092 (-) True CI01000016_03064633_03068201
CI01000016_03062846_03063013.mRNA mRNA downstream 492028 3062846 ~ 3063272 (-) True CI01000016_03062846_03063013
CI01000016_03647744_03675574.mRNA mRNA upstream 88467 3647653 ~ 3675585 (-) False CI01000016_03647744_03675574
CI01000016_03719404_03722988.mRNA mRNA upstream 159981 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_03834829_03843163.mRNA mRNA upstream 275314 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
CI01000016_03881771_03883341.mRNA mRNA upstream 321307 3880493 ~ 3883466 (-) True CI01000016_03881771_03883341
CI01000016_03921124_03930996.mRNA mRNA upstream 360869 3920055 ~ 3931162 (-) False CI01000016_03921124_03930996
TU108180 other downstream 569659 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1279025 2270836 ~ 2276275 (-) True G94786
TU109910 other upstream 76421 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 306575 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 1353522 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1766333 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1853073 5415682 ~ 5418217 (-) True G97020

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00012520 True 872 mRNA 0.56 7 CM030138.1 20292730 ~ 20297061 (-)