RNA id: CI01000016_03647744_03675574.mRNA


Basic Information

Item Value
RNA id CI01000016_03647744_03675574.mRNA
length 555
RNA type mRNA
GC content 0.46
exon number 4
gene id CI01000016_03647744_03675574
representative False

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3647653 ~ 3675585 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCGTGGAGGAATGGTTAGGAGTGGGACAGTCATGAGAGAAATGCTATTTGCCGTTTTTATACTCTCGGTCATTCGATCTGCAGGATCTAAAAAACCGGACGAATGTCCTGCAAAACAGGAAATGTCATGTGAGAGCCTGCGCACGACTGAGGGTTACACGTACCCGGTAATCCTGAGCAACCTCGGCTCGAGGGATTGCGAATATGCGTGGTACTTTCTGAATGGAACATGCATTGTTCATTCAGACGGCAAAGAGAAAATGGATTTTGTAGTGGCAGTGACACTTGGAAATCTGACCGTCAGCGCCTGTGAGGACCTGCAGTGGGAGCTTCGCTGTGACAGCATTCAGACCTGGGAAAGGTTCACAAAGAGGATGCATTTGGATCGGTCCGGAATCCAAAGGAATGAAGAGGAAAATAGCCAGCTCTTGAGGATGAGGAAAACCAGGAGAGGATTCACCTGACACCAGCAGCCTACCTGTAAATGAAAGAGCTGATGGGCAGTTAGGTCTGTATTATAAACAATTAAACAATAATAATTAGGCCTATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109952 lncRNA downstream 13193 3634259 ~ 3634460 (-) True G96658
TU109893 lncRNA downstream 21649 3623837 ~ 3626004 (-) True G96614
TU109949 lncRNA downstream 38776 3608336 ~ 3608877 (-) False G96655
TU109948 lncRNA downstream 38776 3608570 ~ 3608877 (-) True G96655
TU109926 lncRNA downstream 66224 3581219 ~ 3581429 (-) True G96644
TU109908 lncRNA upstream 58940 3734525 ~ 3800968 (-) True G96626
TU109904 lncRNA upstream 105219 3780804 ~ 3786775 (-) True G96622
TU109890 lncRNA upstream 111821 3787406 ~ 3791803 (-) True G96612
TU109978 lncRNA upstream 133925 3809510 ~ 3811499 (-) True G96672
TU109981 lncRNA upstream 144082 3819667 ~ 3820628 (-) True G96675
CI01000016_03555967_03558776.mRNA mRNA downstream 88467 3555300 ~ 3559186 (-) True CI01000016_03555967_03558776
CI01000016_03322103_03326683.mRNA mRNA downstream 316891 3322003 ~ 3330762 (-) False CI01000016_03322103_03326683
CI01000016_03082653_03084658.mRNA mRNA downstream 562995 3082386 ~ 3084658 (-) True CI01000016_03082653_03084658
CI01000016_03072793_03080040.mRNA mRNA downstream 567613 3072728 ~ 3080040 (-) True CI01000016_03072793_03080040
CI01000016_03064633_03068201.mRNA mRNA downstream 578561 3064562 ~ 3069092 (-) True CI01000016_03064633_03068201
CI01000016_03719404_03722988.mRNA mRNA upstream 43582 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_03834829_03843163.mRNA mRNA upstream 158915 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
CI01000016_03881771_03883341.mRNA mRNA upstream 204908 3880493 ~ 3883466 (-) True CI01000016_03881771_03883341
CI01000016_03921124_03930996.mRNA mRNA upstream 244470 3920055 ~ 3931162 (-) False CI01000016_03921124_03930996
CI01000016_04044171_04047247.mRNA mRNA upstream 368430 4044015 ~ 4047305 (-) True CI01000016_04044171_04047247
TU108180 other downstream 662012 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1371378 2270836 ~ 2276275 (-) True G94786
TU110003 other upstream 190176 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 1237123 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1649934 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1736674 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 2483401 6158986 ~ 6159721 (-) True G97341

Expression Profile