RNA id: CI01000016_03834829_03843163.mRNA


Basic Information

Item Value
RNA id CI01000016_03834829_03843163.mRNA
length 4143
RNA type mRNA
GC content 0.47
exon number 9
gene id CI01000016_03834829_03843163
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3834500 ~ 3843266 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTTACATTTAATATTTTTCCACGTGTTGATGCATTTGAGCACATAACAGTTTTTTACAATATGAACAACTGTTCAAATCTATGCTAATGGGATGTCATGTAATGCAGGTATTTGTCATCTACATGGGAATGGGGGACATGAAGACACCAGATTTCGATGACCTGCTGGCAGCGTTTGACATTCCAGATATTGATGCCAAAGAAGCAATTCAGTCTGACACCGATGGTAATCATAATGAACGCAGTGGTGTTGCTGGAAAGGAGAGAAGTGGAAGTCCATGCCTAAGACCCCCAGAAAGCCCTGAGTCTGTTCCTTTAGCTCCTCACAGCGACCCTCCTGTGGTCAGTGTGATTGTAAAAAACAGTGTACATTCTGATGACAAAACTGAAGAGGATGTAACTGGAGACTTTCCTGGTGCTGATGCATCACATGAGTCTCCAGGTTCCAGAGAAGATGACCTAATGCCTCCAGATCCATTCATCTATAATGGACTCAAAACTGTCTCAGATGGGGCTACACAACCCTCTCCATCACCAGCTCTGACCCAGATGCAGCCAAATGGGCCACTTTGGTCTCTCTCTTCCTCTAGAGTGTCTGATGACAACCAGGATGGCATTTCTTCTAAACGTCCTGCATCCAGCACTTTCTCCCCACCTCAGTCCTTACCCCTGACTGATCCCCCCATCTTATCCTCACATTTAATTAGTTCTAACTTTCCCCCCAGAGTTGATTGTGAGGAAGCTCAACCATTAAATGGCACTTTGAGGGCAGGAGTCCGCCGCCGTTTATCCGAAGATGAAGAATCTGAACCAGACCTCGGTAGCCCTGCACTTGTCATACAGGAGAGCCCAGATTCCCAGCTGTGCTCTGCTCCCAAGGTACCACGATTACAACGGTCCCCTTCAAGTGTGTTTCAGCTGCCCTCTCCCTCGTCCCCTTCCTTACCAGTGAGTAACACTCAAATTGAGGAGCCCCCAAAACTTCTACAAAGCAGCGTCAACCCAACATCAGTGACCTCCAAAAATGATTTGCCAGCTAAAGAAAAAGACATTGAGCACATAATAGAGGAGAGAGATTCTCCAGAGAGCCCTGAGCCAGAAATCCCTCAACCTCATACTTCTCTACCCTCAAATCAGCTCGGAGCCAATGAGTCAGAACAGAAGGAGAGAAGAGAAGAAGCCCCTCAAGATCAAGTTATTGACATGAGTGTAAGTGTGCAGGAGAAGAGCAGTGTTCAGAAAAAAAAAGATTATGATGGAGCTGAGGAGACCGAAGAGAAATCTACAGTGCCTAGTTTGGTAGATTCGGTCTCTGAAGATGTCACAAACTCCAGCAAGACCTCCGCCAAGCCTCTCAAAGTGAGAATCAAGACTGTCAAAACATCTGCCGGAAACATCACACGTACTGTATCTAAAGTGGCTCCCAAAGGAGGGGCCTCCAAGGGTCCAGGCGGCTCCAAAGTTCAAGCAGGGGCCCGTAAGTCAGTCCACAGGATTCAGAGATCTGGCGCTGCTTCTCAAGGACCACCTCAGGTGACGATGTTGCCCGTGTCCACCCTTCAGGATGCCAGCACAGCTATGTTATTTGCAGCCAGCAGGGCACAGAATCAAATAGCCACCACTCTCTCTGCCACTGCTGTCAACATCACCAGAACGTCAACCCTGCCATCCATCTCCTCTCTGGGGCAGAAAACGATGAATGGGAACCCTGGGACAGCCAAACCAGCCTCCATTGTGAACAGCCCAGGAGCTGTGATCTCACGCAGCCAGTCTAGCCTCGTGGAGGCCTTCAACAAAATCCTCAACAGTAAAAATCCACTGCCAAGTTATCAGCCGGACCTCTCCACCATGCCTCCCCCTGAATGGGGTCTTCGATTGCCCTCAACGGGATATCGTTGCCTTGAGTGTGGGGATGCGTTTGCCCTGGAGCGCAGCCTGGCAAGGCACTATGATCGCCGCTCTATGAGAATCGAGGTGACCTGTAACCACTGCTCCAAACGCCTGGCCTTCTTCAATAAGTGCAGCCTGCTGCTCCATGCACGAGAACACAAGGAGAAGGGGCTGGTTATGCAGTGTTCACACCTCGTCATGAGTCCGGTCAGTGTGGAGCAGATGATTGGCCAGCAGGATACCGTGCCTATAGGGATGCTCTCTCCTGCTCTGCCTGCCCTTAAAGAAAGTGGTGGCCAACTGACTCAATCTTCTGATAACAGCTGTCCAGAGTGTTGGAGTCCATTCAAAGGGAAGGCAGAAATAGCAGCACACTTTCAAGAGGTGGATCCTGGTGTCACTGACATGCTTCATGACCTCAACACTCACCTGAATCAAACCTGCCTGCATTACTCACGTCGCCTTGGATATAGGTATCTGCACATAGTAGTACTATATACTAGTAAATCCTTGGTTTTATCCATTGGTTTTGTGAAGGAGCTATTTCCTCTTTTCTACAGATGTGCCTGTTGTCATTTGGTGTTTGGAGGAGTGAATAGTCTGAACGCTGTGAAGACTCACATGCAGACGTCTCACTGTGAGGTCTTCCATAAATGCCCCTCCTGCCCCATGGCTTTCAAATCACCCTCTGGTGCTGAAGCCCACTGCACCTCCCAGCATCCTGAACTCCCTGAAACGGCAAGACAGTCTAAGGAGATCTATAAATGCGTGTTGTGTCGGACTGTTTTTACCCAGAAGGCATTGCTCAATGTCCATTTCGACACTCACTTAGCTAAGCAGAAGATGCACGTGTTTAAATGCCCTGACTGTAACAAGCTCTTCACGCAGAGAGGTTCCCTCCTTGAGCATGTTAAGGACTCTCACAGGGACATTTATGACACTTTGGCACAGAACAACTTGGTAAAGATGGATAGCTCTGATGGGGAGGAGTGGGGACGAAATGAAGACAAAGGAAGAGTGGCAAGAGAGGATGGGAACTCGCATATCCAGATCTGGAGCTGCTCACAGTGCCAGACGCGCTACAAAGAGAAAGAGAGCTACATCACCCATATGTCCGAGCAGCATGGCAAGGAACTGAAGAAGTTTCCATGCACTCTTTGTGAAGGCTCCTTCTCTTCATCCTCAAGTTTAAGACGGCACATTCGTGTGAAACACAAAGGCATCAAAAGAGCTTTTTATTGCCAACTTTGTACAGGTGGGAAGAGGAGTTTCAGCAGTAAGCTGATTCTTGAGAAACATATTGAGGCTCAACATGGAGGTGACAAACGAGCAGCCAAACAGGCAGTTCCTCAAATCACAGATGCAGCTGACAGCTCATCTGAGCATGATGGTGCTACTTTGGGCGGGGCCTCAGTTGAAGCAGAAAGCCAATTGGCTGAGAGCAGCCTGACCAGACATGGTAAAAGAGCTGCAGCTGAGGAGCAAGAAGCCACAGGATTTCGCTGCATGCCGTGTGGTTTTACCACAGAGGACAGGGAGGAATTTCTCCAGCATATTGTTTGTCACCGTGACGGGGGCAGCACCTTTCAGTGTCAGCAGTGCGGGGCATGTTTCGCATCCGCCTCCTCCCTCAGCAGGCATCTCTTCATTAGCCATCGCGTGCGTGATTCCCCCTCCGATCACCCCGAGGCATCTCCTGTCACTGGTTTAACTTCTGGACATGTGACCTCTGACTCTGCAGTTGCAGCATGGTCCCCGGGGTCACCATCGAGTGTAGGGGGGACACAGGTAGAGGATGGGGAAGGTAAGCACACCTGTAAGGTGTGTGGACGTTACTTTAGCAAACCTGCTGATCTTAATACACACTTCAGAACTCATGGCATGGCCTTTATCACCGCATACAAAACAGACAAACCAGCGTAGAGAGTCAGGAAAGAATTAACATGAGAGTGAAACTGATGAAACCTGGCAGGTACATGTCTGGGAACATATGCCACCCCAAAATCAAAAACAAAAAATAAGAAATTATATTTTACTTGAAGAAAATGAAGCCTAATTTTAGGACTGTTTTTAATTTTAAGATTTTTTTTTTTCATTATATTTAATTTATTTTGTGACTTTTTTTTATTAAGCACACCAATTCTAATTACTGTAATAAAGTTAAAAAAAAAAAAAAAGATATATTTCATTTCAAATTTTTTCAATTTATTTATATAATGTATTCCCCTTTATTTATGCTGATTTAAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109911 lncRNA downstream 1938 3831525 ~ 3832562 (-) True G96629
TU109981 lncRNA downstream 13872 3819667 ~ 3820628 (-) True G96675
TU109978 lncRNA downstream 23001 3809510 ~ 3811499 (-) True G96672
TU109908 lncRNA downstream 33532 3734525 ~ 3800968 (-) True G96626
TU109890 lncRNA downstream 42697 3787406 ~ 3791803 (-) True G96612
TU109997 lncRNA upstream 18803 3862069 ~ 3887758 (-) True G96687
TU109996 lncRNA upstream 19899 3863165 ~ 3902758 (-) True G96686
TU109998 lncRNA upstream 21234 3864500 ~ 3864945 (-) True G96688
TU110001 lncRNA upstream 46854 3890120 ~ 3913448 (-) True G96690
TU110008 lncRNA upstream 52769 3896035 ~ 3952982 (-) True G96695
CI01000016_03719404_03722988.mRNA mRNA downstream 111442 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_03647744_03675574.mRNA mRNA downstream 158915 3647653 ~ 3675585 (-) False CI01000016_03647744_03675574
CI01000016_03555967_03558776.mRNA mRNA downstream 275314 3555300 ~ 3559186 (-) True CI01000016_03555967_03558776
CI01000016_03322103_03326683.mRNA mRNA downstream 503738 3322003 ~ 3330762 (-) False CI01000016_03322103_03326683
CI01000016_03082653_03084658.mRNA mRNA downstream 749842 3082386 ~ 3084658 (-) True CI01000016_03082653_03084658
CI01000016_03881771_03883341.mRNA mRNA upstream 37227 3880493 ~ 3883466 (-) True CI01000016_03881771_03883341
CI01000016_03921124_03930996.mRNA mRNA upstream 76789 3920055 ~ 3931162 (-) False CI01000016_03921124_03930996
CI01000016_04044171_04047247.mRNA mRNA upstream 200749 4044015 ~ 4047305 (-) True CI01000016_04044171_04047247
CI01000016_04084854_04101874.mRNA mRNA upstream 241458 4084724 ~ 4101953 (-) True CI01000016_04084854_04101874
CI01000016_04181435_04188590.mRNA mRNA upstream 337997 4181263 ~ 4188590 (-) True CI01000016_04181435_04188590
TU109910 other downstream 169187 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 848859 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1558225 2270836 ~ 2276275 (-) True G94786
TU110003 other upstream 22495 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 1069442 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1482253 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1568993 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 2315720 6158986 ~ 6159721 (-) True G97341

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019693 True 3824 mRNA 0.49 11 NC_007127.7 21918503 ~ 21938044 (+)